View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_low_3 (Length: 730)
Name: NF1283_low_3
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_low_3 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 9 - 639
Target Start/End: Original strand, 45242751 - 45243393
Alignment:
| Q |
9 |
caacaatatcacataagaatatagatataaacagca---gcagcaacccattttaaacaggaactgtacattaatctggaggaatttcactatacacaaa |
105 |
Q |
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| T |
45242751 |
caacaatatcacataagaatatagatataaacaacaacagcagcaacccattttaaacaggaactgtacattaatctggaggaatttcactatacacaaa |
45242850 |
T |
|
| Q |
106 |
tttctaaacaacatttttcttatacacggataccacagcagggtggaatagtctcaactcagagataagctcgtcaaaatgatgatttaggagtgaggat |
205 |
Q |
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| T |
45242851 |
tttctaaacaacatttttcttatacacggataccacagcagggtggaatagtctcaactcagaaataagctcgtcaaaatgatgatttaggagtgaggat |
45242950 |
T |
|
| Q |
206 |
atataaaataacgaagaggnnnnnnnntcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaacgcttttc |
305 |
Q |
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| T |
45242951 |
atataaaataacgaagaggaaaaaaaatcaattcatatcgaggttctttctttaactaaatttatatgaaaatgaattgttgtctagcttaatgcttttc |
45243050 |
T |
|
| Q |
306 |
ttcgtcacacacaaaacatacactctttattgtttctttcgaaattcaacatgcagtcattttcaaaatcatgtaaaaatatgtacataaacaaacgata |
405 |
Q |
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| T |
45243051 |
ttcgtcacacacacaacatacactctttattgtttctttcgaaattcaacatgcagtcattttcaaaatcatgtaaaaatatgtacataaacaaacgaca |
45243150 |
T |
|
| Q |
406 |
caaaaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccataatatatga--------tgtttatccct |
497 |
Q |
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| T |
45243151 |
caaaaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccataaaatatgatacagatgtgtttatccct |
45243250 |
T |
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| Q |
498 |
atctctcttattctttatcttctagaacttacagata---nnnnnnnnnnnnnnnnnncatgcaaaaaccaatggatactgtacctgatatcaaaatttt |
594 |
Q |
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| T |
45243251 |
atctctcttattctttatcttctagaacttacagatatttttttttaaaaaaaaaaaacatgcaaaaaccaatggatac--aacctgatatcaaaatttt |
45243348 |
T |
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| Q |
595 |
gatgtccagacatcatttctcaatcaaaaaagtttaggtaccgat |
639 |
Q |
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| T |
45243349 |
gatgtccagacatgatttctcaatcaaaaaagtttaagtaccgat |
45243393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 618
Target Start/End: Original strand, 45237442 - 45237480
Alignment:
| Q |
580 |
tgatatcaaaattttgatgtccagacatcatttctcaat |
618 |
Q |
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| T |
45237442 |
tgatatcaaaactttgatgtccaaacatcatttctcaat |
45237480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 478
Target Start/End: Complemental strand, 8576934 - 8576845
Alignment:
| Q |
390 |
acataaacaaacgatacaa-aaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccata |
478 |
Q |
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| T |
8576934 |
acataaacaaactacacaagaaaggtgattcaatttgacctctaacaaaatgcagttgtgttatttcaacatcaaaatacatacaccata |
8576845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 9061925 - 9061857
Alignment:
| Q |
135 |
ataccacagcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagtga |
201 |
Q |
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| T |
9061925 |
ataccacagcagggtggaatagtctccacattcagaaataagttggccaaaataattatttaggagtga |
9061857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 2000 - 2058
Alignment:
| Q |
143 |
gcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagt |
199 |
Q |
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| T |
2000 |
gcagggtggaatagtctcaacattcagaaataagctggtcaaaataattatttaggagt |
2058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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