View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_low_30 (Length: 285)
Name: NF1283_low_30
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 32 - 277
Target Start/End: Complemental strand, 7303360 - 7303115
Alignment:
| Q |
32 |
tttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7303360 |
tttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagc |
7303261 |
T |
|
| Q |
132 |
aatattaatatctcaagtttaactttagcaacgttatatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcaccc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7303260 |
aatattaatatctcaagtttaactttagcaacgttatatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcaccc |
7303161 |
T |
|
| Q |
232 |
atatcttcatcttcttcaccaaataagtcatgcatgtcttcatctc |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7303160 |
atatcttcatcttcttcaccaaataagtcatgcatgtcttcatctc |
7303115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 32 - 277
Target Start/End: Original strand, 16444825 - 16445070
Alignment:
| Q |
32 |
tttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16444825 |
tttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagc |
16444924 |
T |
|
| Q |
132 |
aatattaatatctcaagtttaactttagcaacgttatatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcaccc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16444925 |
aatattaatatctcaagtttaactttagcaacgttatatctcaaacaatgatgtataatagtttgaatcaattgtctcaccttcatttaatgcatcaccc |
16445024 |
T |
|
| Q |
232 |
atatcttcatcttcttcaccaaataagtcatgcatgtcttcatctc |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16445025 |
atatcttcatcttcttcaccaaataagtcatgcatgtcttcatctc |
16445070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 167 - 276
Target Start/End: Original strand, 40288294 - 40288403
Alignment:
| Q |
167 |
atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat |
266 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| || || |||||||||||||||||||| |||||||||| ||| |
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|
| T |
40288294 |
atatctcaaacaatggtgtgtaatagtttgaattagttgtctcaccttcatttaatgtataactcatatcttcatcttcttcactaaataagtcacccat |
40288393 |
T |
|
| Q |
267 |
gtcttcatct |
276 |
Q |
| |
|
|||||||||| |
|
|
| T |
40288394 |
gtcttcatct |
40288403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 32 - 277
Target Start/End: Complemental strand, 6123538 - 6123293
Alignment:
| Q |
32 |
tttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6123538 |
tttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagc |
6123439 |
T |
|
| Q |
132 |
aatattaatatctcaagtttaactttagcaacgttatatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcaccc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6123438 |
aatattaatatctcaagtttaactttagcaacgttatatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcaccc |
6123339 |
T |
|
| Q |
232 |
atatcttcatcttcttcaccaaataagtcatgcatgtcttcatctc |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6123338 |
atatcttcatcttcttcaccaaataagtcatgcatgtcttcatctc |
6123293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 167 - 276
Target Start/End: Complemental strand, 4202028 - 4201919
Alignment:
| Q |
167 |
atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat |
266 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
4202028 |
atatctcaaacaatggtgtgtaatagtttgaattaattgtctcaccttcatttaatgtataacccatatcttcatcttcttcactaaataagtcacccat |
4201929 |
T |
|
| Q |
267 |
gtcttcatct |
276 |
Q |
| |
|
|||||||||| |
|
|
| T |
4201928 |
gtcttcatct |
4201919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 167 - 276
Target Start/End: Complemental strand, 24741228 - 24741119
Alignment:
| Q |
167 |
atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat |
266 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
24741228 |
atatctcaaacaatggtgtgtaatagtttgaattagctgtctcaccttcatttaatgtataacccatatcttcatcttcttcactaaataagtcacccat |
24741129 |
T |
|
| Q |
267 |
gtcttcatct |
276 |
Q |
| |
|
|||||||||| |
|
|
| T |
24741128 |
gtcttcatct |
24741119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 167 - 276
Target Start/End: Original strand, 25997359 - 25997468
Alignment:
| Q |
167 |
atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat |
266 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
25997359 |
atatctcaaacaatggtgtgtaatagtttgaattagttgtctcaccttcatttaatgtataacccatatcttcatcttcttcactaaataagtcacccat |
25997458 |
T |
|
| Q |
267 |
gtcttcatct |
276 |
Q |
| |
|
|||||||||| |
|
|
| T |
25997459 |
gtcttcatct |
25997468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 10369642 - 10369749
Alignment:
| Q |
167 |
atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat |
266 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||| || |
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|
| T |
10369642 |
atatcttaaacaatggtgtataatagtttgaataaattgtctcaccttcatttaatgtataacccatatcttcatattcttcactaaataagtcacatat |
10369741 |
T |
|
| Q |
267 |
gtcttcat |
274 |
Q |
| |
|
|||||||| |
|
|
| T |
10369742 |
gtcttcat |
10369749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 10369443 - 10369525
Alignment:
| Q |
72 |
aatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatctcaagtttaacttt |
157 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||||| ||||||||| |||||| | |||||| ||||||||||||| | |||||| |
|
|
| T |
10369443 |
aatattttaattttaatactac---accagtttattttaatcttctttaatacagcaagcaatgttaatatctcaagctaaacttt |
10369525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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