View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1283_low_32 (Length: 274)

Name: NF1283_low_32
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1283_low_32
NF1283_low_32
[»] chr2 (8 HSPs)
chr2 (51-211)||(32307069-32307229)
chr2 (96-155)||(32798504-32798563)
chr2 (176-225)||(1763283-1763332)
chr2 (114-193)||(1976822-1976901)
chr2 (127-226)||(15220786-15220885)
chr2 (179-216)||(3654787-3654824)
chr2 (158-223)||(12110919-12110984)
chr2 (111-147)||(13475920-13475956)
[»] scaffold0248 (1 HSPs)
scaffold0248 (58-237)||(13261-13437)
[»] chr1 (13 HSPs)
chr1 (58-145)||(17753493-17753580)
chr1 (128-210)||(10324538-10324620)
chr1 (111-223)||(18325317-18325429)
chr1 (102-218)||(48832926-48833042)
chr1 (58-223)||(12655236-12655401)
chr1 (158-225)||(47981794-47981861)
chr1 (173-223)||(47307505-47307555)
chr1 (158-223)||(4347034-4347099)
chr1 (105-170)||(6568621-6568686)
chr1 (102-149)||(27500321-27500368)
chr1 (107-209)||(1233346-1233448)
chr1 (127-212)||(34875028-34875113)
chr1 (127-230)||(34571103-34571207)
[»] scaffold1528 (1 HSPs)
scaffold1528 (58-145)||(217-304)
[»] chr5 (18 HSPs)
chr5 (129-226)||(38592275-38592371)
chr5 (111-196)||(6951260-6951345)
chr5 (128-211)||(28304812-28304895)
chr5 (60-230)||(29923235-29923404)
chr5 (115-213)||(4306561-4306658)
chr5 (176-225)||(621289-621338)
chr5 (106-147)||(7925426-7925467)
chr5 (111-184)||(8591526-8591599)
chr5 (114-223)||(35138951-35139060)
chr5 (176-223)||(2868350-2868397)
chr5 (173-224)||(6988227-6988278)
chr5 (173-223)||(5465398-5465448)
chr5 (106-196)||(10372938-10373028)
chr5 (173-226)||(10273265-10273318)
chr5 (172-217)||(34195316-34195361)
chr5 (110-171)||(37882708-37882769)
chr5 (62-149)||(3970402-3970490)
chr5 (158-226)||(36928342-36928409)
[»] chr8 (12 HSPs)
chr8 (75-230)||(2764390-2764546)
chr8 (127-197)||(37641611-37641681)
chr8 (176-228)||(40991569-40991621)
chr8 (113-226)||(4950530-4950643)
chr8 (111-170)||(35495305-35495364)
chr8 (115-149)||(32767436-32767470)
chr8 (113-223)||(32927939-32928049)
chr8 (192-229)||(9916884-9916921)
chr8 (113-150)||(35064460-35064497)
chr8 (186-223)||(38715209-38715246)
chr8 (105-149)||(2924816-2924860)
chr8 (186-225)||(30081648-30081688)
[»] scaffold0361 (1 HSPs)
scaffold0361 (111-226)||(14039-14154)
[»] chr7 (10 HSPs)
chr7 (111-230)||(40795910-40796029)
chr7 (113-238)||(40561670-40561796)
chr7 (127-223)||(7168966-7169062)
chr7 (77-147)||(19098489-19098560)
chr7 (113-208)||(22310402-22310497)
chr7 (113-211)||(44570680-44570778)
chr7 (138-223)||(40491650-40491735)
chr7 (195-223)||(5267621-5267649)
chr7 (181-217)||(39005763-39005799)
chr7 (186-230)||(39734633-39734677)
[»] chr6 (12 HSPs)
chr6 (111-209)||(882731-882829)
chr6 (104-197)||(7486468-7486561)
chr6 (127-223)||(3524986-3525082)
chr6 (111-223)||(10874208-10874320)
chr6 (113-156)||(31868070-31868113)
chr6 (181-223)||(9043732-9043774)
chr6 (111-193)||(34620931-34621013)
chr6 (111-193)||(34748368-34748450)
chr6 (186-223)||(10054992-10055029)
chr6 (179-212)||(19601879-19601912)
chr6 (127-223)||(32888885-32888981)
chr6 (129-165)||(32997122-32997158)
[»] chr3 (14 HSPs)
chr3 (102-212)||(190862-190971)
chr3 (129-224)||(48089617-48089711)
chr3 (158-223)||(41115290-41115355)
chr3 (111-211)||(35253407-35253507)
chr3 (111-223)||(35264339-35264451)
chr3 (106-209)||(41114991-41115094)
chr3 (158-223)||(42644298-42644364)
chr3 (158-224)||(52925550-52925616)
chr3 (190-223)||(584721-584754)
chr3 (111-196)||(37334989-37335074)
chr3 (158-223)||(44225601-44225666)
chr3 (193-226)||(54784462-54784495)
chr3 (135-223)||(38626725-38626813)
chr3 (143-223)||(49158597-49158677)
[»] chr4 (12 HSPs)
chr4 (103-211)||(34719105-34719213)
chr4 (106-209)||(22683904-22684007)
chr4 (158-224)||(34943420-34943486)
chr4 (77-170)||(43628128-43628222)
chr4 (58-170)||(35728936-35729049)
chr4 (162-223)||(48575480-48575541)
chr4 (103-230)||(2341394-2341521)
chr4 (127-230)||(33843772-33843876)
chr4 (111-149)||(32100337-32100375)
chr4 (186-223)||(8283591-8283628)
chr4 (174-223)||(12224466-12224515)
chr4 (202-230)||(2206662-2206690)
[»] scaffold0184 (1 HSPs)
scaffold0184 (186-224)||(7344-7382)
[»] scaffold0172 (1 HSPs)
scaffold0172 (158-223)||(15257-15322)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 9e-79; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 32307069 - 32307229
Alignment:
Q  51 atgtttgctctagaattaattctgatttgaagctaagacttgtagtgtttgctccaaacatgatttttacacttatatttattgttcaactcacttttat 150  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32307069 atgtttactctagaattaattctaatttgaagctaagatttgtagtgtttgctccaaacatgatttttacacttatatttattgttcaactcacttttat 32307168  T
Q  151 gtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32307169 gtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatttt 32307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 32798563 - 32798504
Alignment:
Q  96 tgtttgctccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaa 155  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32798563 tgtttactccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaa 32798504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 1763283 - 1763332
Alignment:
Q  176 tttacattcgactcaattttaactaaaatcaattttacaaaatcaatttt 225  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||||    
T  1763283 tttaaattcaactcaattttaaccaaaatcaattttacaaaatcaatttt 1763332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 1976901 - 1976822
Alignment:
Q  114 tttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaatt 193  Q
    |||||||||| | |||||||||| ||||||||||||  ||||| |||||||| ||||| |  ||||| ||| ||||||||    
T  1976901 tttttacactcaaatttattgttgaactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactcaatt 1976822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 15220885 - 15220786
Alignment:
Q  127 atttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaattttt 226  Q
    ||||||||||||||||||||| |  ||||| |||||||| ||||  || ||||||||| ||||| ||||    | ||||||| |||||||||||| ||||    
T  15220885 atttattgttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcacttttcgtcataatcaatattacaaaatcaaatttt 15220786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 3654824 - 3654787
Alignment:
Q  179 acattcgactcaattttaactaaaatcaattttacaaa 216  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  3654824 acattcaactcacttttaactaaaatcaattttacaaa 3654787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 12110919 - 12110984
Alignment:
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||||| ||||  || |||| |||| ||||| ||||||| ||||||||||| ||||||||||||    
T  12110919 tatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaatt 12110984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 13475920 - 13475956
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttt 147  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  13475920 tgatttttacacttaaatttattgttcaaatcacttt 13475956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 58 - 237
Target Start/End: Complemental strand, 13437 - 13261
Alignment:
Q  58 ctctagaattaattctgatttgaagctaagacttgtagtgtttgctccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaatt 157  Q
    |||||||||||||| | |||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||   |||||||||    
T  13437 ctctagaattaattttaattttaagctaagatttgtagtgtttgctccagacatgatttttacagttatatttattgttcaactcact---atgtgaatt 13341  T
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatttttgtcatcgtaga 237  Q
    ||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  13340 tatccaaatataagccattttacattcaactcaattttaaatataatcaattttacaaaatcaatttttgtcaccgtaga 13261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 17753493 - 17753580
Alignment:
Q  58 ctctagaattaattctgatttgaagctaagacttgtagtgtttgctccaaacatgatttttacacttatatttattgttcaactcact 145  Q
    |||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  17753493 ctctagaattaattttaatttgaagctaagatttgtagtgtttgctccagacatgatttttacagttatatttattgttcaactcact 17753580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 10324538 - 10324620
Alignment:
Q  128 tttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattt 210  Q
    |||||||||||||| | ||||||| |||| ||||||||||||| ||| ||||||||| ||||  || ||||||||||||||||    
T  10324538 tttattgttcaacttagttttatgcgaatgtatccaaatataaaccactttacattcaactcccttataactaaaatcaattt 10324620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 18325429 - 18325317
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattt 210  Q
    ||||||||||| | | ||||| |||||| |||||||| |  | |||||||| ||| | || ||||||||||||| ||||| |||||  ||||||||||||    
T  18325429 tgatttttacattaaaatttactgttcatctcactttcacataaatttatctaaacagaaaccattttacattcaactcacttttatgtaaaatcaattt 18325330  T
Q  211 tacaaaatcaatt 223  Q
    ||||||| |||||    
T  18325329 tacaaaaccaatt 18325317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 48832926 - 48833042
Alignment:
Q  102 ctccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaa 201  Q
    |||||||  ||||||||||||| | ||||||| || ||||||| ||||||||||| ||||| || |||| ||| || |||||| ||||| |||||||||     
T  48832926 ctccaaatgtgatttttacactcaaatttattattgaactcacgtttatgtgaatatatccgaacataaaccacttaacattcaactcacttttaactat 48833025  T
Q  202 aatcaattttacaaaat 218  Q
    | |  ||||||||||||    
T  48833026 agtttattttacaaaat 48833042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 12655236 - 12655401
Alignment:
Q  58 ctctagaattaattctgatttgaagctaagacttgtagtgtttgc-tccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaat 156  Q
    |||||||||||||||| | |||||||||  | ||||||  ||||  || ||| ||||| ||||| || |  |||||||||||||||||||| |  |||||    
T  12655236 ctctagaattaattctaacttgaagctagaatttgtagcatttgagtctaaatatgatctttactctaaagtttattgttcaactcacttt-acatgaat 12655334  T
Q  157 ttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    ||||| ||| |||  ||||| ||||||| ||||  |||||| |||||||||||| ||| ||||||||    
T  12655335 ttatctaaacatagaccattctacattcaactcgcttttaagtaaaatcaatttcacataatcaatt 12655401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 47981861 - 47981794
Alignment:
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatttt 225  Q
    |||||||| ||||  || |||| |||| ||||||||||||| ||||| ||||||||||||||||||||    
T  47981861 tatccaaacataaatcactttaaattcaactcaattttaaccaaaattaattttacaaaatcaatttt 47981794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 47307505 - 47307555
Alignment:
Q  173 cattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  47307505 cattttacattcaactcacttttaactaaagtcaattttataaaatcaatt 47307555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 4347034 - 4347099
Alignment:
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||||| ||||  || ||||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  4347034 tatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaatt 4347099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 6568621 - 6568686
Alignment:
Q  105 caaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataa 170  Q
    ||||||| ||||||||||||| |||||||||| |||| | |||||||||||| ||| |||| ||||    
T  6568621 caaacattatttttacacttaaatttattgttaaacttatttttatgtgaatgtattcaaacataa 6568686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 27500321 - 27500368
Alignment:
Q  102 ctccaaacatgatttttacacttatatttattgttcaactcactttta 149  Q
    |||||||||| ||||||||||| | ||||||||||||||||| |||||    
T  27500321 ctccaaacattatttttacactcaaatttattgttcaactcattttta 27500368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 1233346 - 1233448
Alignment:
Q  107 aacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatca 206  Q
    ||||||||||||||||| | |||||||||| |||||||||| |  ||||| |||| ||| ||||   ||||||| ||  |||||  |||||||||||| |    
T  1233346 aacatgatttttacactcaaatttattgttgaactcactttcacatgaatgtatctaaacataaattattttaccttaaactcatgtttaactaaaatta 1233445  T
Q  207 att 209  Q
    |||    
T  1233446 att 1233448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 34875113 - 34875028
Alignment:
Q  127 atttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatttta 212  Q
    |||||||||||||| |||||||   |||||||||||||| ||||  || |||||| || ||| | ||||| ||| |||||||||||    
T  34875113 atttattgttcaacccacttttgcatgaatttatccaaagataaatcactttacaatcaactgacttttagctagaatcaatttta 34875028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 34571207 - 34571103
Alignment:
Q  127 atttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatttta-caaaatcaatttt 225  Q
    ||||||||||||| |||||||||  | ||  |||||||||||||   |  |||||||| ||||| ||||||  | |||||||||||  ||||||||||||    
T  34571207 atttattgttcaattcacttttacctaaacgtatccaaatataaatgaacttacattcaactcacttttaatcagaatcaattttatgaaaatcaatttt 34571108  T
Q  226 tgtca 230  Q
    |||||    
T  34571107 tgtca 34571103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 217 - 304
Alignment:
Q  58 ctctagaattaattctgatttgaagctaagacttgtagtgtttgctccaaacatgatttttacacttatatttattgttcaactcact 145  Q
    |||||||||||||| | |||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  217 ctctagaattaattttaatttaaagctaagatttgtagtgtttgctccagacatgatttttacagttatatttattgttcaactcact 304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 38592275 - 38592371
Alignment:
Q  129 ttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaattttt 226  Q
    |||||||| ||||||||||| ||| ||| ||||||||||||| ||| ||| |||| ||||| ||||||| ||| ||||||||||||||||||||||||    
T  38592275 ttattgttgaactcacttttttgtaaatgtatccaaatataaaccactttgcattggactc-attttaagtaatatcaattttacaaaatcaattttt 38592371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 6951345 - 6951260
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaatttta 196  Q
    |||||| ||||| || ||||||  ||||| |||||||||  |||||||||||||||| ||| |||||||| ||||||||| |||||    
T  6951345 tgatttgtacacataaatttataattcaattcacttttacatgaatttatccaaatacaagtcattttactttcgactcactttta 6951260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 28304895 - 28304812
Alignment:
Q  128 tttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatttt 211  Q
    ||||| ||||||| |||| ||| |||||| |||||||||||||  |||||  ||||| ||||| ||||||||||||| ||||||    
T  28304895 tttatagttcaacccactgttacgtgaatatatccaaatataaatcatttcccattcaactcatttttaactaaaataaatttt 28304812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 29923235 - 29923404
Alignment:
Q  60 ctagaattaattctgatttgaagctaagacttgtagtgtttg-ctccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaattt 158  Q
    |||||||| ||||| | |||||||||||| |||| || |||  ||| |||| ||||||||||||| | ||||| |||| ||||||| |||| | |||| |    
T  29923235 ctagaattgattctaacttgaagctaagatttgtcgtttttaactcaaaacgtgatttttacactcaaatttaatgtttaactcac-tttacgcgaatgt 29923333  T
Q  159 atccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatttttgtca 230  Q
    ||  ||| |||| ||| || |||||| | ||| |||||||| |||| ||  |||||||||||||||||||||    
T  29923334 atgtaaacataaaccacttcacattcaattcacttttaactgaaat-aaagttacaaaatcaatttttgtca 29923404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 4306561 - 4306658
Alignment:
Q  115 ttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttac 213  Q
    ||||||||||| ||||||||||||| ||  |||||  ||||| |||||||| ||||  |||||||||||| |||||| |  ||||| ||||||||||||    
T  4306561 ttttacacttaaatttattgttcaattcttttttacatgaatgtatccaaacataaatcattttacattcaactcaa-tcaaactagaatcaattttac 4306658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 621338 - 621289
Alignment:
Q  176 tttacattcgactcaattttaactaaaatcaattttacaaaatcaatttt 225  Q
    |||| |||| ||| ||||||||| ||||||||||||||||||||||||||    
T  621338 tttaaattcaactgaattttaaccaaaatcaattttacaaaatcaatttt 621289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 7925426 - 7925467
Alignment:
Q  106 aaacatgatttttacacttatatttattgttcaactcacttt 147  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  7925426 aaacatgatttttacactcaaatttattgttcaactcacttt 7925467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 8591526 - 8591599
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattc 184  Q
    |||||||| |||| | |||| |||||||||||||||||||  |||| |||||||||||||  || |||||||||    
T  8591526 tgattttttcactcaaatttgttgttcaactcacttttataggaatgtatccaaatataaatcaatttacattc 8591599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 35139060 - 35138951
Alignment:
Q  114 tttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttac 213  Q
    ||||| |||| | ||||||||||||||||||||| || ||||| ||||  || ||||  |||||||| ||| |||||||||||   | |||||| |||||    
T  35139060 tttttccactcaaatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttagacagaatcaagtttac 35138961  T
Q  214 aaaatcaatt 223  Q
    | ||||||||    
T  35138960 ataatcaatt 35138951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 2868397 - 2868350
Alignment:
Q  176 tttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    ||||||||| ||||| |||||||||||||||||| |||||||| ||||    
T  2868397 tttacattcaactcacttttaactaaaatcaattctacaaaattaatt 2868350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 6988227 - 6988278
Alignment:
Q  173 cattttacattcgactcaattttaactaaaatcaattttacaaaatcaattt 224  Q
    ||||||| |||| ||| | |||||| ||||||||||||||||||||||||||    
T  6988227 cattttaaattcaacttacttttaattaaaatcaattttacaaaatcaattt 6988278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 5465448 - 5465398
Alignment:
Q  173 cattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||| ||||| | ||| ||||| ||||||||||||||||||||||||||    
T  5465448 catttttcattcaattcacttttatctaaaatcaattttacaaaatcaatt 5465398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 10372938 - 10373028
Alignment:
Q  106 aaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaatttta 196  Q
    |||| ||||||||| | | | ||||||||||||||| |||||  ||| ||| |||||||| |||| ||| ||||||||| ||||| |||||    
T  10372938 aaacgtgatttttataatgaaatttattgttcaacttactttcgtgtaaatgtatccaaacataaaccagtttacattcaactcattttta 10373028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 10273318 - 10273265
Alignment:
Q  173 cattttacattcgactcaattttaactaaaatcaattttacaaaatcaattttt 226  Q
    ||||||| |||| ||||| || ||| |||||| |||||||||||||||||||||    
T  10273318 cattttatattcaactcacttataagtaaaattaattttacaaaatcaattttt 10273265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 34195316 - 34195361
Alignment:
Q  172 ccattttacattcgactcaattttaactaaaatcaattttacaaaa 217  Q
    ||||||||||||| ||| | |||||| |||||||||||||||||||    
T  34195316 ccattttacattcaactgagttttaattaaaatcaattttacaaaa 34195361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 37882769 - 37882708
Alignment:
Q  110 atgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataag 171  Q
    |||||||||||| | | || |||||||||||||||||||| || ||| ||| ||||||||||    
T  37882769 atgatttttacattgaaatgtattgttcaactcacttttacgtaaatgtattcaaatataag 37882708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 3970490 - 3970402
Alignment:
Q  62 agaattaattctgatttgaagctaagacttgtagtgtttg-ctccaaacatgatttttacacttatatttattgttcaactcactttta 149  Q
    |||||| ||||| || |||||||| || ||||||  |||| |||||||| ||||||||||| ||| | ||| ||||||| |||||||||    
T  3970490 agaattgattctaatctgaagctaggaattgtagcttttgactccaaacttgatttttacatttaaaattactgttcaattcactttta 3970402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 36928342 - 36928409
Alignment:
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaattttt 226  Q
    ||||||||| ||| ||||||||||||| ||| ||||||    | |||||||||||||||||||||||||    
T  36928342 tatccaaatgtaaaccattttacattcaact-aattttgttcagaatcaattttacaaaatcaattttt 36928409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 2764546 - 2764390
Alignment:
Q  75 atttgaagctaagacttgtagtgtttg-ctccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagcc 173  Q
    |||||||| ||||| ||||||  |||| |||||||  ||||||||||  |   |||||| |||||||||||||||| |||||| |||||||||||||  |    
T  2764546 atttgaagttaagatttgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatc 2764447  T
Q  174 attttacattcgactcaattttaactaaaatcaattttacaaaatcaatttttgtca 230  Q
    | |||| |||| ||| | |||||||||| ||||| ||||  ||||||| ||||||||    
T  2764446 actttatattcaacttacttttaactaatatcaagtttaggaaatcaacttttgtca 2764390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 37641611 - 37641681
Alignment:
Q  127 atttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaa 197  Q
    ||||||||||||||||||||||| || |||||||||||| ||||| || ||||| ||||| ||| ||||||    
T  37641611 atttattgttcaactcacttttaggtaaatttatccaaacataagtcactttactttcgattcacttttaa 37641681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 40991621 - 40991569
Alignment:
Q  176 tttacattcgactcaattttaactaaaatcaattttacaaaatcaatttttgt 228  Q
    ||||||||| ||||| |||||| |||||||| |||||||||||||||||||||    
T  40991621 tttacattcaactcatttttaagtaaaatcatttttacaaaatcaatttttgt 40991569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 4950530 - 4950643
Alignment:
Q  113 atttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatttta 212  Q
    ||||||||||||| ||||||| |||||||||||||    | ||| |||||||| ||||  || ||||| ||| |||||||| || | | |||||||||||    
T  4950530 atttttacacttaaatttatttttcaactcactttctcataaatatatccaaacataaatcactttaccttcaactcaattatagcaataatcaatttta 4950629  T
Q  213 caaaatcaattttt 226  Q
     |||||||| ||||    
T  4950630 aaaaatcaaatttt 4950643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 35495305 - 35495364
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataa 170  Q
    ||||||||| ||| | ||||||||||||| |||||||||| ||||| |||||||| ||||    
T  35495305 tgatttttatactcaaatttattgttcaaatcacttttatttgaatgtatccaaacataa 35495364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 32767436 - 32767470
Alignment:
Q  115 ttttacacttatatttattgttcaactcactttta 149  Q
    ||||||||||| |||||||||||||||||||||||    
T  32767436 ttttacacttaaatttattgttcaactcactttta 32767470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 32927939 - 32928049
Alignment:
Q  113 atttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatttta 212  Q
    ||||||||||  | |||||| ||||||||||||||||  ||||| |||||||| | ||  || ||| | ||| |||||||||||   | |||||||||||    
T  32927939 atttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaatttta 32928038  T
Q  213 caaaatcaatt 223  Q
    || ||||||||    
T  32928039 cataatcaatt 32928049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 9916921 - 9916884
Alignment:
Q  192 ttttaactaaaatcaattttacaaaatcaatttttgtc 229  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  9916921 ttttaactaaaatcaattttataaattcaatttttgtc 9916884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 35064497 - 35064460
Alignment:
Q  113 atttttacacttatatttattgttcaactcacttttat 150  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  35064497 atttttacacttaaatttattattcaactcacttttat 35064460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 38715246 - 38715209
Alignment:
Q  186 actcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||||||||||||||||||||| | |||||||||||    
T  38715246 actcaattttaactaaaatcaattctgcaaaatcaatt 38715209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 2924816 - 2924860
Alignment:
Q  105 caaacatgatttttacacttatatttattgttcaactcactttta 149  Q
    ||||||||||||||||||| | || ||||| ||||||||||||||    
T  2924816 caaacatgatttttacactcaaatatattgatcaactcactttta 2924860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 30081688 - 30081648
Alignment:
Q  186 actcaattttaactaaaatcaatttt-acaaaatcaatttt 225  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  30081688 actcacttttaactaaaatcaattttcacaaaatcaatttt 30081648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 14154 - 14039
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattt 210  Q
    ||||||||||||| | ||||||| ||||||||||||| |  ||||| |||||||| ||||  || ||||| ||| |||||||| || | | |||||||||    
T  14154 tgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactcaattgtagcaagaatcaattt 14055  T
Q  211 tacaaaatcaattttt 226  Q
    ||||||||||| ||||    
T  14054 tacaaaatcaaatttt 14039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 40796029 - 40795910
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattt 210  Q
    ||||||| ||||| | ||||| | ||||| |||||||||  ||||| |||||||  |||| ||| ||||| ||| | ||| ||||| |||| ||||||||    
T  40796029 tgattttaacactcaaatttactattcaaatcacttttacatgaatgtatccaatcataaaccactttaccttcaattcatttttacctaacatcaattt 40795930  T
Q  211 tacaaaatcaatttttgtca 230  Q
    ||||||||||||||||||||    
T  40795929 tacaaaatcaatttttgtca 40795910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 238
Target Start/End: Complemental strand, 40561796 - 40561670
Alignment:
Q  113 atttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatt-tt 211  Q
    |||| |||||| | || ||||||||||||||||||||  ||||| |||||||| ||||  || ||||| ||| |||||||||| |||| ||||||||       
T  40561796 atttatacactcaaatatattgttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttttactagaatcaattcac 40561697  T
Q  212 acaaaatcaatttttgtcatcgtagaa 238  Q
     ||||||||| ||||||||| ||||||    
T  40561696 tcaaaatcaacttttgtcatggtagaa 40561670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 7168966 - 7169062
Alignment:
Q  127 atttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    ||||||| ||||| |||||||||| | ||| |||  |||| ||| ||| ||||||||| ||||| ||||||| ||||||||||| | ||||||||||    
T  7168966 atttattattcaattcacttttatctaaatatattaaaatgtaaaccactttacattcaactcacttttaaccaaaatcaatttcaaaaaatcaatt 7169062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 19098560 - 19098489
Alignment:
Q  77 ttgaagctaagacttgtagtgtttgc-tccaaacatgatttttacacttatatttattgttcaactcacttt 147  Q
    |||||||||||| ||||||| ||||| ||||||||| ||||||||||| | ||||||  ||||||| |||||    
T  19098560 ttgaagctaagatttgtagtttttgcctccaaacataatttttacactcaaatttatcattcaactaacttt 19098489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 22310497 - 22310402
Alignment:
Q  113 atttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaat 208  Q
    ||||||||||||| ||||||| ||||| ||||||||| | |||| |||||||| ||||  | |||||  ||| |||||||||| || ||| |||||    
T  22310497 atttttacacttaaatttatttttcaattcacttttacgagaatgtatccaaacataaatctttttatcttcaactcaatttttaccaaactcaat 22310402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 44570778 - 44570680
Alignment:
Q  113 atttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatttt 211  Q
    ||||||||| | | |||||||  ||||||||||||||| ||||| ||  |||| ||||  || ||||||||| |||||||||||| |  ||||||||||    
T  44570778 atttttacattcaaatttatttatcaactcacttttatatgaatataatcaaacataaatcactttacattcaactcaattttaagttgaatcaatttt 44570680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 40491650 - 40491735
Alignment:
Q  138 aactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    ||||||||||||  ||||| |||||||| ||||  || ||||| ||| ||||| |||||   ||||||||||||||| ||||||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaatt 40491735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 5267649 - 5267621
Alignment:
Q  195 taactaaaatcaattttacaaaatcaatt 223  Q
    |||||||||||||||||||||||||||||    
T  5267649 taactaaaatcaattttacaaaatcaatt 5267621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 39005763 - 39005799
Alignment:
Q  181 attcgactcaattttaactaaaatcaattttacaaaa 217  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  39005763 attcaactcaattttaaccaaaatcaattttacaaaa 39005799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 39734677 - 39734633
Alignment:
Q  186 actcaattttaactaaaatcaattttacaaaatcaatttttgtca 230  Q
    ||||| ||||| ||| |||||||||||||||||||||| ||||||    
T  39734677 actcagttttagctagaatcaattttacaaaatcaattcttgtca 39734633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 882731 - 882829
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatt 209  Q
    ||||||||||| | | |||||||||| |||||||||||   ||||| |||||||| ||||  |||||||| ||| ||||||||||||||| ||||||||    
T  882731 tgatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaactagaatcaatt 882829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 7486468 - 7486561
Alignment:
Q  104 ccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaa 197  Q
    |||||||||||||||||||||| |||  |||||||| ||||||| |  |||| ||||||||| ||||  |||||||| ||  ||||| ||||||    
T  7486468 ccaaacatgatttttacacttaaattgtttgttcaattcactttcacatgaacttatccaaacataaatcattttaccttaaactcacttttaa 7486561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 3524986 - 3525082
Alignment:
Q  127 atttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||| |||||||| |||||||  | ||| ||| ||||||||| ||| ||| ||||| ||||| ||||| | | ||||||||||||| ||||||||    
T  3524986 atttatcgttcaactgacttttacataaatgtattcaaatataaaccagtttgcattcaactcacttttagccacaatcaattttacataatcaatt 3525082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 10874320 - 10874208
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattt 210  Q
    ||||||| ||||| | | ||||| ||| |||||||||||  | ||| |||||||| |||| ||| || |||||| |||||  |||| ||||||||||||     
T  10874320 tgattttcacactcaaaattattattcgactcacttttacctaaatatatccaaacataaaccacttcacattcaactcacatttacctaaaatcaatta 10874221  T
Q  211 tacaaaatcaatt 223  Q
    |||||||| ||||    
T  10874220 tacaaaattaatt 10874208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 31868070 - 31868113
Alignment:
Q  113 atttttacacttatatttattgttcaactcacttttatgtgaat 156  Q
    ||||||||||| | ||||||| ||||||||||||||||||||||    
T  31868070 atttttacactcaaatttatttttcaactcacttttatgtgaat 31868113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 9043774 - 9043732
Alignment:
Q  181 attcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||| ||||| |||||||||||||||||| |||||||||||||    
T  9043774 attcaactcacttttaactaaaatcaattatacaaaatcaatt 9043732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 34620931 - 34621013
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaatt 193  Q
    ||||||||||||| | ||||||| |||||||||||||||  | ||| |||||||| ||||  || ||||| ||| ||||||||    
T  34620931 tgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaatt 34621013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 34748368 - 34748450
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaatt 193  Q
    ||||||||||||| | ||||||| |||||||||||||||  | ||| |||||||| ||||  || ||||| ||| ||||||||    
T  34748368 tgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaatt 34748450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 10055029 - 10054992
Alignment:
Q  186 actcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  10055029 actcaattttaactaatatcaattttacaaaaccaatt 10054992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 19601912 - 19601879
Alignment:
Q  179 acattcgactcaattttaactaaaatcaatttta 212  Q
    |||||| |||||||||||||||||||||||||||    
T  19601912 acattcaactcaattttaactaaaatcaatttta 19601879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 32888981 - 32888885
Alignment:
Q  127 atttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||||||||||||||||||||  | ||| ||| |||| ||||  |||||||  ||| |||||||| |||| ||||| ||||| | | ||||||||    
T  32888981 atttattgttcaactcacttttacataaatatattcaaacataaatcattttatcttcaactcaattataaccaaaattaatttcatagaatcaatt 32888885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 32997158 - 32997122
Alignment:
Q  129 ttattgttcaactcacttttatgtgaatttatccaaa 165  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  32997158 ttattgttcgactcacttttatctgaatttatccaaa 32997122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 212
Target Start/End: Original strand, 190862 - 190971
Alignment:
Q  102 ctccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaa 201  Q
    ||||||||||||||||| |||| | ||||||||||||||||||||| | |||||| ||||| |||||||  ||||||   ||  ||||| ||| ||||||    
T  190862 ctccaaacatgatttttgcactcaaatttattgttcaactcactttcacgtgaatgtatcc-aatataaatcattttgttttaaactcagtttcaactaa 190960  T
Q  202 aatcaatttta 212  Q
    |||||||||||    
T  190961 aatcaatttta 190971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 48089711 - 48089617
Alignment:
Q  129 ttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaattt 224  Q
    |||||||||||| |||||| |||  ||| |||||||  ||||  |||||||||||| ||||| ||||||||| ||||||||||| | |||||||||    
T  48089711 ttattgttcaacccacttt-atgcaaatgtatccaatcataaatcattttacattcaactcacttttaactagaatcaattttaaagaatcaattt 48089617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 41115355 - 41115290
Alignment:
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||||| |||| ||||||||||||| ||||| | ||| | |||||||||| |||||||||||||    
T  41115355 tatccaaacataaaccattttacattcaactcattgttagccaaaatcaattatacaaaatcaatt 41115290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 35253507 - 35253407
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattt 210  Q
    ||||||||||||| | ||||||  |||||||||||||||  ||| | | |||||||||||  || ||||| ||  ||||||||||| | |||||||||||    
T  35253507 tgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagccaaaatcaattt 35253408  T
Q  211 t 211  Q
    |    
T  35253407 t 35253407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 35264451 - 35264339
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattt 210  Q
    ||||||| ||||||| ||||||||||||| ||| |||||  ||||| || ||||| ||||  || ||||| ||| ||||| ||||   || |||||||||    
T  35264451 tgattttaacacttaaatttattgttcaagtcatttttacatgaatgtacccaaacataactcactttactttcaactcacttttggttacaatcaattt 35264352  T
Q  211 tacaaaatcaatt 223  Q
    |||| ||||||||    
T  35264351 tacagaatcaatt 35264339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 41115094 - 41114991
Alignment:
Q  106 aaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatc 205  Q
    |||||||||||||||||| | | |||||||| || |||||||||||  ||| |||||||| |||| ||| || |||||| || || |  ||| |||||||    
T  41115094 aaacatgatttttacactgaaacttattgtttaagtcacttttatgcaaatgtatccaaacataaaccacttaacattcaacacactgctaagtaaaatc 41114995  T
Q  206 aatt 209  Q
    ||||    
T  41114994 aatt 41114991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 42644298 - 42644364
Alignment:
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaa-ttttacaaaatcaatt 223  Q
    |||||||| ||||  || ||||||||| ||||| |||||||||||||||| ||||| ||||||||||    
T  42644298 tatccaaacataaatcactttacattcaactcacttttaactaaaatcaatttttataaaatcaatt 42644364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 52925616 - 52925550
Alignment:
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaattt 224  Q
    |||||||| |||| ||| ||||| ||| |||||||||||   | |||||||||||||||||||||||    
T  52925616 tatccaaacataaaccactttactttcaactcaattttagtgagaatcaattttacaaaatcaattt 52925550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 584754 - 584721
Alignment:
Q  190 aattttaactaaaatcaattttacaaaatcaatt 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  584754 aattttagctaaaatcaattttacaaaatcaatt 584721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 37335074 - 37334989
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaatttta 196  Q
    ||||||||||||||  ||| ||||||||||||| |||||| ||||| ||| || | ||||  || ||||| ||| |||||||||||    
T  37335074 tgatttttacacttgaattcattgttcaactcatttttatatgaatgtattcagacataaatcactttaccttcaactcaatttta 37334989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 44225601 - 44225666
Alignment:
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||||| ||||  || ||||||||  ||||| ||||||| |||||||||| |||||||||||||    
T  44225601 tatccaaacataaatcactttacattaaactcacttttaacgaaaatcaattctacaaaatcaatt 44225666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 54784462 - 54784495
Alignment:
Q  193 tttaactaaaatcaattttacaaaatcaattttt 226  Q
    |||||| |||||||||||||||||||||||||||    
T  54784462 tttaaccaaaatcaattttacaaaatcaattttt 54784495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 38626725 - 38626813
Alignment:
Q  135 ttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    ||||||||||||  | |||||| | |||||| ||||  ||||| |||||| ||||| ||||||||||| || | |||||| ||||||||    
T  38626725 ttcaactcacttccacgtgaatatgtccaaacataaatcatttcacattcaactcacttttaactaaagtcgactttacataatcaatt 38626813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 49158597 - 49158677
Alignment:
Q  143 acttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||||| | ||| ||||| |||||||  ||| ||| |||| | ||| ||||| || |||||||||||||||||||||||    
T  49158597 acttttatattaatctatccgaatataaatcatcttatattctagtcacttttatcttaaatcaattttacaaaatcaatt 49158677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 34719105 - 34719213
Alignment:
Q  103 tccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaa 202  Q
    ||||||||||||||||||| | | ||||||| |||||||| |||| |||  ||| |||||||| |||| | ||||||||||  ||||  |||||| ||||    
T  34719105 tccaaacatgatttttacattgaaatttatttttcaactcgctttcatgcaaatgtatccaaacataaacaattttacatttaactcggttttaagtaaa 34719204  T
Q  203 atcaatttt 211  Q
    |||||||||    
T  34719205 atcaatttt 34719213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 22683904 - 22684007
Alignment:
Q  106 aaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatc 205  Q
    |||| ||||||||||| | | |||||||||||||||| ||||||  | ||| | |||||| |||| ||||||||| ||| ||||| |||||| |||||||    
T  22683904 aaacgtgatttttacattgaaatttattgttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactcacttttaagtaaaatc 22684003  T
Q  206 aatt 209  Q
    ||||    
T  22684004 aatt 22684007  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 34943420 - 34943486
Alignment:
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaattt 224  Q
    |||| ||| ||||| |||||||||||| ||||||||||| ||||||| ||||||| |||||||||||    
T  34943420 tatctaaaaataagtcattttacattcaactcaattttatctaaaattaattttataaaatcaattt 34943486  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 43628128 - 43628222
Alignment:
Q  77 ttgaagctaagacttgtagtgtttg-ctccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataa 170  Q
    |||||||||||| ||||||  |||| |||||||||||||||| ||| ||| ||||||||||||||||   ||||| |||||  ||||||||||||    
T  43628128 ttgaagctaagatttgtagattttgactccaaacatgattttaacatttaaatttattgttcaactcgtatttatatgaatgcatccaaatataa 43628222  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 35728936 - 35729049
Alignment:
Q  58 ctctagaattaattctgatttgaagctaagacttgtagtgtttgctccaaa-catgatttttacacttatatttattgttcaactcacttttatgtgaat 156  Q
    ||||| |||||||||| | ||||||||| || |||||   ||||||| ||| ||||||||||||||  | ||||||||||||| ||||||| | |||||     
T  35728936 ctctataattaattctaacttgaagctatgatttgtaccttttgctctaaaacatgatttttacacccaaatttattgttcaagtcactttcacgtgaac 35729035  T
Q  157 ttatccaaatataa 170  Q
     |||||||||||||    
T  35729036 atatccaaatataa 35729049  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 48575480 - 48575541
Alignment:
Q  162 caaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||| |||| ||||||||||||| ||||| ||||| | ||||||||||||||||||||||||    
T  48575480 caaaaataaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaatt 48575541  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 2341394 - 2341521
Alignment:
Q  103 tccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaa 202  Q
    ||||||| |||||||||  || | ||| ||||| ||||||| ||| || |||  ||||||||| ||||  | ||||| |||  ||||| ||| |||| ||    
T  2341394 tccaaacgtgatttttaagctcaaattcattgtgcaactcattttcatttgagcttatccaaacataaatctttttatattaaactcactttaaactgaa 2341493  T
Q  203 atcaattttacaaaatcaatttttgtca 230  Q
    ||||||| ||||||||||||||||||||    
T  2341494 atcaattctacaaaatcaatttttgtca 2341521  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 33843772 - 33843876
Alignment:
Q  127 atttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatttta-caaaatcaatttt 225  Q
    ||||||||||||||||||| |||  ||||| |||||||| ||||  || ||||||| | ||||| ||||| | | ||||||||  | |||||||||||||    
T  33843772 atttattgttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaaatcaatttt 33843871  T
Q  226 tgtca 230  Q
    |||||    
T  33843872 tgtca 33843876  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 32100337 - 32100375
Alignment:
Q  111 tgatttttacacttatatttattgttcaactcactttta 149  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  32100337 tgatttttacactcaaatttattgttcaactcactttta 32100375  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 8283628 - 8283591
Alignment:
Q  186 actcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  8283628 actcacttttaagtaaaatcaattttacaaaatcaatt 8283591  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 12224466 - 12224515
Alignment:
Q  174 attttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    ||||| ||||| ||| | ||||||||||||| ||||||||||||||||||    
T  12224466 attttgcattcaacttacttttaactaaaataaattttacaaaatcaatt 12224515  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 2206662 - 2206690
Alignment:
Q  202 aatcaattttacaaaatcaatttttgtca 230  Q
    |||||||||||||||||||||||||||||    
T  2206662 aatcaattttacaaaatcaatttttgtca 2206690  T

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Target: scaffold0184 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 7344 - 7382
Alignment:
Q  186 actcaattttaactaaaatcaattttacaaaatcaattt 224  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  7344 actcaattttaactaaaatcaattctgcaaaatcaattt 7382  T

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Target: scaffold0172 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 15322 - 15257
Alignment:
Q  158 tatccaaatataagccattttacattcgactcaattttaactaaaatcaattttacaaaatcaatt 223  Q
    |||||||| ||||  || |||| |||| ||||| ||||||| ||||||||||| ||||||||||||    
T  15322 tatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaatt 15257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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