View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_low_34 (Length: 252)
Name: NF1283_low_34
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_low_34 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 40450838 - 40450607
Alignment:
| Q |
22 |
catcatca-ctaagaacaaaaatatgttcctccatagctccatagaatcagatgcttctatagctttcttccttctcttttcctctttacttttcgttgc |
120 |
Q |
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| T |
40450838 |
catcatcatctaagaacaaaaatatgttcctccatagctccatagaatcagatgcttctatagctttcttccttctcttttcctctttacttttcgttgc |
40450739 |
T |
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| Q |
121 |
ttattccatttttaaacgatagctaaaattctcttatctcttttcccctttattctagttttcttcnnnnnnnngtccaaaaacaataaaatcatctcat |
220 |
Q |
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| T |
40450738 |
ttattccatttttaaacgatagctaaaattctcttatctcttttcccctttattctagttttcttcaaaaaaaagtccaaaaacaataaaatcatctcat |
40450639 |
T |
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| Q |
221 |
cttttaggaacaattccggcttggttacaggc |
252 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40450638 |
cttttaggaacaattccggcttggttacaggc |
40450607 |
T |
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