View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_low_35 (Length: 252)
Name: NF1283_low_35
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_low_35 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 40450382 - 40450477
Alignment:
| Q |
158 |
ttcgtagtcataatttcatttctctccctcacaattgtatatttcaagagtttatcttcttatcagct-ataaatatttcacaaagtaaacaagat |
252 |
Q |
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| T |
40450382 |
ttcgtagtcatattttcatttctctccctcacaattgtatatttcaagagtttatcttcttatcagctaataaatatttcacaaagtaaacaagat |
40450477 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 73
Target Start/End: Original strand, 40449877 - 40449907
Alignment:
| Q |
43 |
agtattaaagaagtgtacaaaatatttcctt |
73 |
Q |
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| T |
40449877 |
agtattaaagaagtgtacaaaatatttcctt |
40449907 |
T |
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