View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_low_39 (Length: 248)
Name: NF1283_low_39
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 23388614 - 23388503
Alignment:
| Q |
7 |
gacggataaacaaactcggagcaggacagagattacaaaattgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagaga |
106 |
Q |
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| T |
23388614 |
gacggataaacaaactcggagcaagacagagattacagaactgtataaaatatggtggaggaagaagcagggaagaggaacaataagaaagatgcagaga |
23388515 |
T |
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| Q |
107 |
aggagagctgag |
118 |
Q |
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| T |
23388514 |
agaagagctgag |
23388503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 23388433 - 23388395
Alignment:
| Q |
188 |
aacagtgtgcaattggattaggattgtgacaacagacga |
226 |
Q |
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| T |
23388433 |
aacagtgtgcaattggattaggattgtgacaacagacga |
23388395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 36940904 - 36940950
Alignment:
| Q |
54 |
aaatatggtggaggaagaagcagagaagaggaacaataagaaagatgca |
102 |
Q |
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| T |
36940904 |
aaatatggtggaggaagaagcggagaagagga--gataagaaagatgca |
36940950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 42841058 - 42840951
Alignment:
| Q |
11 |
gataaacaaactcggagcaggacagagattacaaaattgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagagaagga |
110 |
Q |
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| T |
42841058 |
gataaacaaactcggagtaggacagagattactgaactgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagagaagaa |
42840959 |
T |
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| Q |
111 |
gagctgag |
118 |
Q |
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||||||| |
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| T |
42840958 |
aagctgag |
42840951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 28424693 - 28424587
Alignment:
| Q |
7 |
gacggataaacaaactcggagcaggacagagattacaaaattgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagaga |
106 |
Q |
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||||||||||||| | |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28424693 |
gacggataaacaa-cacggagcaggacaaagattacagaactgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagaga |
28424595 |
T |
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| Q |
107 |
aggagagc |
114 |
Q |
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|| ||||| |
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| T |
28424594 |
agaagagc |
28424587 |
T |
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