View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1284-Insertion-3 (Length: 384)

Name: NF1284-Insertion-3
Description: NF1284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1284-Insertion-3
NF1284-Insertion-3
[»] chr2 (1 HSPs)
chr2 (8-384)||(17594123-17594500)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 17594500 - 17594123
Alignment:
Q  8 tttaggggaaaggccgccggaaccggctttcgaataccaaacaacgaggaccaaatggttctcaaaaacaaagacacaaactatatatgaattattcaaa 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17594500 tttaggggaaaggccaccggaaccggctttcgaataccaaacaacgaagaccaaatggctctcaaaaacaaagacacaaactatatatgaattattcaaa 17594401  T
Q  108 tacgtaacattttttcttcttctacaaacaaagatattgttttcaagatttgagcacgcgaccttcttgtcattagataacaacctaattatcgcgtcca 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||    
T  17594400 tacgtaacattttttcttcttttacaaacaaagatattgttttcaagatttgagcacgcgaccttcttatcataagataacaacctgattatcacgtcca 17594301  T
Q  208 agctcgcattctagatatgttaatctgtattataaat-nnnnnnnnnnnnnnnnnnngcatgcccttacaagaagctcagcaacgaattgaggttgattt 306  Q
    ||||||||||||| |||||||||| || |||||||||                     ||||| ||||||||||||||||||||||||||||||||||||    
T  17594300 agctcgcattctacatatgttaatgtgcattataaataaaaaaaaaggaaaagaaaaccatgcacttacaagaagctcagcaacgaattgaggttgattt 17594201  T
Q  307 aagggtcttaggatccagaatgttacacgattagccactgcaaccgctaatatttgtttgacaagttctttaaggtaa 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17594200 aagggtcttaggatccagaatgttacacgattagccactgcaaccgctaatatttgtttgacaagttctttaaggtaa 17594123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University