View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12840_high_6 (Length: 215)
Name: NF12840_high_6
Description: NF12840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12840_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 22852546 - 22852403
Alignment:
| Q |
16 |
agagaagggttggtgaacagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgattatgtttatgcattgttgaat |
115 |
Q |
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| T |
22852546 |
agagaaggattgttgaacagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtttttgtttgatgattatgtttatgcattgttgaat |
22852447 |
T |
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| Q |
116 |
tgaatgttaatttccattctcatattaaggctatgtttgggaag |
159 |
Q |
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| T |
22852446 |
tgaatgttaatttccattctcatattaaggctatgtttgggaag |
22852403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 22828050 - 22827969
Alignment:
| Q |
34 |
agaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgattatgtttatgcattgttgaat |
115 |
Q |
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| T |
22828050 |
agaggatgaaagatggtggaggtggttcaggtatggaaattcaaagtttttgtttgataattatgtttatgcattgttgaat |
22827969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 22815762 - 22815663
Alignment:
| Q |
16 |
agagaagggttggtgaacagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgattatgtttatgcattgttgaat |
115 |
Q |
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| T |
22815762 |
agagaagggctgatgaacagaggatgaaagatggtgaaggtggttcaggtatggaaattcaaagttcatgtttgataattatgtttatgtattgttgaat |
22815663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 22796910 - 22796819
Alignment:
| Q |
20 |
aagggttggtgaacagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgattatgtttatgcattgtt |
111 |
Q |
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| T |
22796910 |
aagggctggtgagcagaggatgaaagatggtggaggtgtttcaggtatggaaattcaaagttctagtttgataattatgtttatgcattgtt |
22796819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 22838503 - 22838434
Alignment:
| Q |
20 |
aagggttggtgaacagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttg |
89 |
Q |
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| T |
22838503 |
aagggttggtgaacagaggatgaaagatggtggaggtggttcaggtatggaaattcaaagttcttgtttg |
22838434 |
T |
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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 5621045 - 5621136
Alignment:
| Q |
20 |
aagggttggtgaacagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgattatgtttatgcattgtt |
111 |
Q |
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| T |
5621045 |
aagggctggtgagcagaggatgaaagatggtggaggtgtttcaggtatggaaattcaaagttctagtttgataattatgtttatgcattgtt |
5621136 |
T |
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