View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12840_low_12 (Length: 215)
Name: NF12840_low_12
Description: NF12840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12840_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 43553010 - 43553160
Alignment:
| Q |
18 |
accaccaggtggactaataccagcagcaaaagttacggtggcaattaaaacggccactaatacaatggtgtttcttgcatttagtaatgcctcttggtgc |
117 |
Q |
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| T |
43553010 |
accaccaggtggactaataccagcagcaaaagttacggtggcaattaaaacagccactaacacaatagtgtttcttgcatttagtaatgcctcttggtgc |
43553109 |
T |
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| Q |
118 |
atctcatgatagtgtttcctcttagtatgattcacattttcaatttttcct |
168 |
Q |
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| T |
43553110 |
atctcatgatagtgtttcctcttagtatgattcacattttcaatttttcct |
43553160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 43549012 - 43549162
Alignment:
| Q |
18 |
accaccaggtggactaataccagcagcaaaagttacggtggcaattaaaacggccactaatacaatggtgtttcttgcatttagtaatgcctcttggtgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |||| |
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| T |
43549012 |
accaccaggtggactaataccagcagcaaaagttacagtagcaattaaaacagccactaacacaatagtgtttcttgcatttagtaatgcctctttgtgc |
43549111 |
T |
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| Q |
118 |
atctcatgatagtgtttcctcttagtatgattcacattttcaatttttcct |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43549112 |
atctcatgatagtgtttcctcttagtatgattcacattttcaatttttcct |
43549162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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