View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12840_low_2 (Length: 423)
Name: NF12840_low_2
Description: NF12840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12840_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Original strand, 30315295 - 30315695
Alignment:
| Q |
11 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315295 |
gagcagagagaatatgaagaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
30315394 |
T |
|
| Q |
111 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
210 |
Q |
| |
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| ||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315395 |
ccgcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
30315494 |
T |
|
| Q |
211 |
atactatattctcactcagtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaatgaaattgaatgtagcctatattagttann |
310 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30315495 |
atactatattctcactcggtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaattaaattgaatgtagcctatattagttatt |
30315594 |
T |
|
| Q |
311 |
nnnnnnnnnnaatgacatgttaacattatttaaaatatttggttctacttaattgaaggtgaggaagacaatgtgataagccaaattcagagaccagtga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30315595 |
ttttatttttaatgacatgttaacattatttaaaatatttggttctacttaattgaaggtgaggaagacaatgtgataagccaaatagagagaccagtga |
30315694 |
T |
|
| Q |
411 |
a |
411 |
Q |
| |
|
| |
|
|
| T |
30315695 |
a |
30315695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 30286714 - 30287064
Alignment:
| Q |
11 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30286714 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
30286813 |
T |
|
| Q |
111 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |
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| T |
30286814 |
cggcaggtcatccaattgtcgtaactgcttcttcggatctctctttgcttggatttggtatcaatgcggagaacaatcaaaggaacttccttgctgg--t |
30286911 |
T |
|
| Q |
211 |
atactatattctcactcagtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaatgaaattgaatgtagcctatattagttann |
310 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| | |
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|
| T |
30286912 |
atactgtattctcactcagtctct----ttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaatt |
30287007 |
T |
|
| Q |
311 |
nnnnnnnnnnaatgacatgttaacattatttaaaatatttggttctacttaattgaa |
367 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
30287008 |
ttttatttttaatgacatgttaacattaattaaaagatttgcttctacttaattgaa |
30287064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 30291748 - 30292098
Alignment:
| Q |
11 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
30291748 |
gagcagagagaatatgaggaagatgaacaagaagaagagagaagccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattc |
30291847 |
T |
|
| Q |
111 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
210 |
Q |
| |
|
| |||||| |||||| ||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |
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|
| T |
30291848 |
cagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctgg--t |
30291945 |
T |
|
| Q |
211 |
atactatattctcactcagtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaatgaaattgaatgtagcctatattagttann |
310 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| | |
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|
| T |
30291946 |
atactgtattctcactcagtctct----ttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaatt |
30292041 |
T |
|
| Q |
311 |
nnnnnnnnnnaatgacatgttaacattatttaaaatatttggttctacttaattgaa |
367 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
30292042 |
ttttatttttaatgacatgttaacattaattaaaagatttgcttctacttaattgaa |
30292098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 30304382 - 30304732
Alignment:
| Q |
11 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
30304382 |
gagcagagagaatatgaggaagatgaacaagaagaagagagaagccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattc |
30304481 |
T |
|
| Q |
111 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
210 |
Q |
| |
|
| |||||| |||||| ||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |
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|
| T |
30304482 |
cagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctgg--t |
30304579 |
T |
|
| Q |
211 |
atactatattctcactcagtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaatgaaattgaatgtagcctatattagttann |
310 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| | |
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|
| T |
30304580 |
atactgtattctcactcagtctct----ttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaatt |
30304675 |
T |
|
| Q |
311 |
nnnnnnnnnnaatgacatgttaacattatttaaaatatttggttctacttaattgaa |
367 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
30304676 |
ttttatttttaatgacatgttaacattaattaaaagatttgcttctacttaattgaa |
30304732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 29 - 209
Target Start/End: Original strand, 30299187 - 30299370
Alignment:
| Q |
29 |
gaagatgaacaacaacaagaa---agaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaa |
125 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30299187 |
gaagatgaacaacaagaagaagagagaagccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaa |
30299286 |
T |
|
| Q |
126 |
ttgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggta |
209 |
Q |
| |
|
||| || | ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
30299287 |
ctgtcgttagcgcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
30299370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 30292147 - 30292200
Alignment:
| Q |
363 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaacgagc |
416 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30292147 |
ttgaaggtgaggaggacaatgtgataagccaaattcagagaccagtgaaagagc |
30292200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 30304781 - 30304834
Alignment:
| Q |
363 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaacgagc |
416 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30304781 |
ttgaaggtgaggaggacaatgtgataagccaaattcagagaccagtgaaagagc |
30304834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 30299989 - 30300037
Alignment:
| Q |
363 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30299989 |
ttgaaggtgaggaagacaatgtgataagccaaatagagagaccagtgaa |
30300037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 30287113 - 30287161
Alignment:
| Q |
363 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaa |
411 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
30287113 |
ttgaaggtgaggaggacaatgtgataagccaaatagagagaccagtgaa |
30287161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 46810199 - 46810333
Alignment:
| Q |
77 |
gctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatg |
176 |
Q |
| |
|
|||||| |||||||||| || ||| | |||||||||||||||| ||| | | ||| |||||| || ||||| ||| ||||| ||||||||||||| |
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|
| T |
46810199 |
gctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcgaatctcaatttccttggctttggtatcaatg |
46810298 |
T |
|
| Q |
177 |
ctgagaacaatcagaggaacttccttgctggtata |
211 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
46810299 |
ctgagaacaatcagagaaactttcttgcaggtata |
46810333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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