View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12840_low_5 (Length: 349)
Name: NF12840_low_5
Description: NF12840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12840_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 4031087 - 4031429
Alignment:
| Q |
1 |
cccactcttgattaaatggacaaggttttaaggaaaatgataaatatagcgaaggaaacaatcatgaagcaattgcgaataagtgttattggttgccaat |
100 |
Q |
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| T |
4031087 |
cccactcttgattaaatggacaaggttttaaggaaaatgataaatatagcgaaggaaacaatcatgaagcaattgcaaataagtgttattggttgccaat |
4031186 |
T |
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| Q |
101 |
ccccaccactgggtgatttcagcaaattccaggactgaagtgattccat------------tttatcaaacacacgcccgcgagatttcacaaaaacaaa |
188 |
Q |
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| T |
4031187 |
ccccacgactgggtgatttcagcaaattccaggactgaagtgattccatccgttatgtagttttatcaaacacgcgctcgcgagatttcacaaaaacaaa |
4031286 |
T |
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| Q |
189 |
ttcgctatatatagcaaatcctcttcttaaataatagccgtgttgcagttgcaattttttacatgtactaaaattgggttatatacaaattatggtcaca |
288 |
Q |
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| T |
4031287 |
ttcgctatatatagcaaatcctcttcttaaataatagccgtgttgcagttgcaattttttatatgtactaaaattgggttatatacaaattatggtcaca |
4031386 |
T |
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| Q |
289 |
attgcaatcacaaagtaatcgcaaagatataaaataaacattg |
331 |
Q |
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| T |
4031387 |
attgcaatcacaaagtaatcgcaaagatataaaataaacattg |
4031429 |
T |
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