View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12840_low_6 (Length: 287)
Name: NF12840_low_6
Description: NF12840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12840_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 122 - 276
Target Start/End: Original strand, 990874 - 991028
Alignment:
| Q |
122 |
ataagctggttttatcaattcactaggaattcctcaatggtatagttgttacaaattgatgatgcaggcatacacaagatgcatagtgcgtggtagtctt |
221 |
Q |
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| T |
990874 |
ataagctggttttatcaattcactaggaattcctcaatggaatagttgttacaaattgatgatgcaggcatacacaagatgcatagtgtgtggtagtctt |
990973 |
T |
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| Q |
222 |
ttttctagatgcttccatctgcatcaggaggactattaaattagctacagttcat |
276 |
Q |
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| T |
990974 |
ttttctagatgcttccatctgcatcagaaggactattaaattagctacagttcat |
991028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 990802 - 990863
Alignment:
| Q |
24 |
ttgtggtcctcagctgttctttttcctccaactattatgtgatttacttggtttcttaaaac |
85 |
Q |
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| T |
990802 |
ttgtgctcctcagctgttctttttcctccaactattatgtgatttacttggtttcttaaaac |
990863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 122 - 276
Target Start/End: Original strand, 36933620 - 36933761
Alignment:
| Q |
122 |
ataagctggttttatcaattcactaggaattcctcaatggtatagttgttacaaattgatgatgcaggcatacacaagatgcatagtgcgtggtagtctt |
221 |
Q |
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| T |
36933620 |
ataagctggttttatcaattcactaggaattcctcgatggaatagttgttacaaattgatggtgcaggcata-------------gtgtgtggtagtctt |
36933706 |
T |
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| Q |
222 |
ttttctagatgcttccatctgcatcaggaggactattaaattagctacagttcat |
276 |
Q |
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| T |
36933707 |
ttttctagatgcttccatctgcatcagaaggactattaaattagttacagttcat |
36933761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 36933509 - 36933570
Alignment:
| Q |
24 |
ttgtggtcctcagctgttctttttcctccaactattatgtgatttacttggtttcttaaaac |
85 |
Q |
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|||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |
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| T |
36933509 |
ttgtggtcctcagctgttctctttccacaaactattatgtgatttacttggtttcttaaaac |
36933570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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