View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12840_low_7 (Length: 286)
Name: NF12840_low_7
Description: NF12840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12840_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 49169267 - 49168998
Alignment:
| Q |
20 |
attgggatgatggatttgttattatttcgagggagtcaagatcccttgcaccatcctattattgactctaagctactatgtttgacatttccaaatttta |
119 |
Q |
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| T |
49169267 |
attgggatgattgatttgttattatttcgagggagtcaagatcccttgcaccatcctattattgactctaagctactatctttgacatttccaaatttta |
49169168 |
T |
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| Q |
120 |
--------tgtttccattgatgtattgattactactactatttcatatgtaattttgcctctaagattagtataaataaggtcattcctttcatgtaaga |
211 |
Q |
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| T |
49169167 |
ccagactgtgtttccattgatgtattgattactactactatttcatatgtaattttgcctctaagattagtataaataaggtcattcctttcatgtaaga |
49169068 |
T |
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| Q |
212 |
tcat---------tgtaaaattgtgagtttctaatttgagaattaaagagtatattctctcttgacttct |
272 |
Q |
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| T |
49169067 |
tcattaaagtttatctaaaattgtgagtttctaatttgagaattaaagagtatattctctcttgacttct |
49168998 |
T |
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