View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12840_low_8 (Length: 268)
Name: NF12840_low_8
Description: NF12840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12840_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 5391623 - 5391379
Alignment:
| Q |
11 |
cacagaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcag |
110 |
Q |
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| T |
5391623 |
cacagaggctcaaaactgcaaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtgtcccttcaa |
5391524 |
T |
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| Q |
111 |
acgggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacaccca |
210 |
Q |
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| T |
5391523 |
acgggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacaccca |
5391424 |
T |
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| Q |
211 |
atttctatcacacacaagaggatatcttgctagaagaggttggta |
255 |
Q |
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| T |
5391423 |
atttctatcacacacaagaggatatcttgctagaagaggttggta |
5391379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 5395433 - 5395191
Alignment:
| Q |
12 |
acagaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcaga |
111 |
Q |
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| T |
5395433 |
acagaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctcaatctttgccatgtgtcccttcaaa |
5395334 |
T |
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| Q |
112 |
cgggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaa |
211 |
Q |
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| T |
5395333 |
caggaactaagcactacctaggatccttcgaaacgatcggtaagatcaaggcccatgagtcccccttcacggaggatgtgccacgccttgtcacacccaa |
5395234 |
T |
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| Q |
212 |
tttctatcacacacaagaggatatcttgctagaagaggttggt |
254 |
Q |
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| T |
5395233 |
tttctattacacacaggaggatatcttgttagaagaggttggt |
5395191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 5401577 - 5401341
Alignment:
| Q |
15 |
gaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgg |
114 |
Q |
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||||||||||| || || || || ||| | ||||| ||||||||||||| |||||| ||||||||| ||| ||||||| ||||| || |||||||| | |
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| T |
5401577 |
gaggctcaaaattgtgaggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactg |
5401478 |
T |
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| Q |
115 |
gaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaattt |
214 |
Q |
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| T |
5401477 |
gtgccaagcactatgtaggacccttcgaaatcatcggtaagatcaaacctcatgagtcccccttcacagaggatgtgccacgcctcgacacacccaattt |
5401378 |
T |
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| Q |
215 |
ctatcacacacaagaggatatcttgctagaagaggtt |
251 |
Q |
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| T |
5401377 |
ctattacacattagaggatatcttgttcgaagaggtt |
5401341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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