View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12840_low_9 (Length: 233)
Name: NF12840_low_9
Description: NF12840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12840_low_9 |
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| [»] scaffold0105 (7 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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Alignment Details
Target: scaffold0105 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 14596 - 14804
Alignment:
| Q |
10 |
agtgagatgaaccatgcggagtttaaaaaatgccaaggatagttgctctagctcttctccatagaggcagttaacgagatcattgcaatgtacagggttg |
109 |
Q |
| |
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|||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14596 |
agtgagattaaccatgcagagtttgaaaaatgccaaggatagttgctctaactcttctccatagaggaagttaacgagatcattgcaatgtacagggttg |
14695 |
T |
|
| Q |
110 |
ctccacataatttattccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagttta |
209 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14696 |
ctccacataatttgttccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagttta |
14795 |
T |
|
| Q |
210 |
tgtaaagtt |
218 |
Q |
| |
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||||||||| |
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|
| T |
14796 |
tgtaaagtt |
14804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 50246 - 50038
Alignment:
| Q |
10 |
agtgagatgaaccatgcggagtttaaaaaatgccaaggatagttgctctagctcttctccatagaggcagttaacgagatcattgcaatgtacagggttg |
109 |
Q |
| |
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|||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50246 |
agtgagattaaccatgcagagtttgaaaaatgccaaggatagttgctctaactcttctccatagaggaagttaacgagatcattgcaatgtacagggttg |
50147 |
T |
|
| Q |
110 |
ctccacataatttattccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagttta |
209 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50146 |
ctccacataatttgttccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagttta |
50047 |
T |
|
| Q |
210 |
tgtaaagtt |
218 |
Q |
| |
|
||||||||| |
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| T |
50046 |
tgtaaagtt |
50038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 2445 - 2653
Alignment:
| Q |
10 |
agtgagatgaaccatgcggagtttaaaaaatgccaaggatagttgctctagctcttctccatagaggcagttaacgagatcattgcaatgtacagggttg |
109 |
Q |
| |
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|||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
2445 |
agtgagattaaccatgcagagtttgaaaaatgccaaggatagttgctctaactcttctccaaagaggaagttaacgagatcattgcaatgtacagggttg |
2544 |
T |
|
| Q |
110 |
ctccacataatttattccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagttta |
209 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2545 |
ctccacataatttgttccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagttta |
2644 |
T |
|
| Q |
210 |
tgtaaagtt |
218 |
Q |
| |
|
||||||||| |
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|
| T |
2645 |
tgtaaagtt |
2653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 31848 - 31640
Alignment:
| Q |
10 |
agtgagatgaaccatgcggagtttaaaaaatgccaaggatagttgctctagctcttctccatagaggcagttaacgagatcattgcaatgtacagggttg |
109 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31848 |
agtgagattaaccatgcagagtttgaaaaatgccaaggatagttgctctaactcttctccatagaggaagttaacgagatcattgcaatgtacagggttg |
31749 |
T |
|
| Q |
110 |
ctccacataatttattccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagttta |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31748 |
ctccacataattttttccttttatatcatgaaaatatttgaaaataattttgttatatttgttgacaacataaatattataataactttcaaatagttta |
31649 |
T |
|
| Q |
210 |
tgtaaagtt |
218 |
Q |
| |
|
||||||||| |
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|
| T |
31648 |
tgtaaagtt |
31640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 8639 - 8739
Alignment:
| Q |
118 |
aatttattccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagtttatgtaaagt |
217 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8639 |
aatttgttccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagtttatgtaaagt |
8738 |
T |
|
| Q |
218 |
t |
218 |
Q |
| |
|
| |
|
|
| T |
8739 |
t |
8739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 36536 - 36436
Alignment:
| Q |
118 |
aatttattccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagtttatgtaaagt |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36536 |
aatttgttccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagtttatgtaaagt |
36437 |
T |
|
| Q |
218 |
t |
218 |
Q |
| |
|
| |
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|
| T |
36436 |
t |
36436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 7231 - 7343
Alignment:
| Q |
10 |
agtgagatgaaccatgcggagtttaaaaaatgccaaggatagttgctctagctcttctccatagaggcagttaacgagatcattgcaatgtacagggttg |
109 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
7231 |
agtgagattaaccatgcagagtttgaaaaatgccaaggatagtatctctaactcttctccatagaggaagttaacgagatcattgcaatgtacaaggttg |
7330 |
T |
|
| Q |
110 |
ctccacataattt |
122 |
Q |
| |
|
||||||||||||| |
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|
| T |
7331 |
ctccacataattt |
7343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 7131 - 7339
Alignment:
| Q |
10 |
agtgagatgaaccatgcggagtttaaaaaatgccaaggatagttgctctagctcttctccatagaggcagttaacgagatcattgcaatgtacagggttg |
109 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7131 |
agtgagattaaccatgcagagtttgaaaaatgccaaggatagttgctctaactcttctccatagaggaagttaacgagatcattgcaatgtacagggttg |
7230 |
T |
|
| Q |
110 |
ctccacataatttattccttttatatcatgaaaatatttggaaataattttgttatatttgttgacaacataaatattataataactttcaaatagttta |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7231 |
ctccacataattttttccttttatatcatgaaaatatttgaaaataattttgttatatttgttgacaacataaatattataataactttcaaatagttta |
7330 |
T |
|
| Q |
210 |
tgtaaagtt |
218 |
Q |
| |
|
||||||||| |
|
|
| T |
7331 |
tgtaaagtt |
7339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 11304707 - 11304767
Alignment:
| Q |
108 |
tgctccacataatttattccttttatatcatgaaaatatttggaaataattttgttatatt |
168 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11304707 |
tgctccacataatttgttccttttatatcatgaaaatatttggaaataatttttttatatt |
11304767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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