View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_12 (Length: 460)
Name: NF12841_high_12
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Original strand, 3208814 - 3209249
Alignment:
| Q |
19 |
agtgtgcatatggtgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3208814 |
agtgtgcatatggtgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcggccgtgctggctgtgtgagt |
3208913 |
T |
|
| Q |
119 |
tccatggccaacatcatcgtatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatgg |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208914 |
tccatggccaacatcatcgtatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatgg |
3209013 |
T |
|
| Q |
219 |
ccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209014 |
ccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttac |
3209113 |
T |
|
| Q |
319 |
cttgattggaatttccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209114 |
cttgattggaatttccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttga |
3209213 |
T |
|
| Q |
419 |
tagaacctcctcattctcttctatagcctttgcttc |
454 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||| |
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| T |
3209214 |
tagaacctcctcattctcttctagagccttggcttc |
3209249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 3202840 - 3203276
Alignment:
| Q |
19 |
agtgtgcatatggtgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
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|
| T |
3202840 |
agtgtgcatatggtgccatgccaattgcagtaccattggcattaccaaagacattagcacctttcacgggccttccagcggccgtgctggccgtgtgagt |
3202939 |
T |
|
| Q |
119 |
tccatggccaacatcatcgtatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatgg |
218 |
Q |
| |
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||| |||||||||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3202940 |
tccgtggccaacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatgg |
3203039 |
T |
|
| Q |
219 |
ccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttac |
318 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
3203040 |
ccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttac |
3203139 |
T |
|
| Q |
319 |
cttgattggaatttccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttga |
418 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||| | || || || | ||| |||| |
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| T |
3203140 |
cttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttggagtgtgagttgtgtgtaatgagaaaatcttttctggtcgaattga |
3203239 |
T |
|
| Q |
419 |
tagaacctcctcattctcttctatagcctttgcttct |
455 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||| |
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|
| T |
3203240 |
cagaacctcctcattctcttctagaaccttggcttct |
3203276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 3216753 - 3217198
Alignment:
| Q |
19 |
agtgtgcatatggtgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagt |
118 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||| ||||| || || |||||||| || || || || |||||||||||||||||||||| |||||||| |
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| T |
3216753 |
agtgtgcatctggtgccatgcctgttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgtgtgagt |
3216852 |
T |
|
| Q |
119 |
tccatggccaacatcatcgtatggaagggatgaattt---------acaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaat |
209 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||| ||||| || ||| ||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
3216853 |
tccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaat |
3216952 |
T |
|
| Q |
210 |
tcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatga |
309 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||| |||||||||||| | |||||||||||||| |
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|
| T |
3216953 |
tcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatga |
3217052 |
T |
|
| Q |
310 |
tccctttaccttgattggaatttccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccag |
409 |
Q |
| |
|
|||||||||| ||||||||||| ||| || ||||| | ||||| |||||||||||||||| ||||||||||| |||||||| || || || | |
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|
| T |
3217053 |
tccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgagaggatgttttctgg |
3217152 |
T |
|
| Q |
410 |
ccgagttgatagaacctcctcattctcttctatagcctttgcttct |
455 |
Q |
| |
|
||| |||||||||||||||| |||||||||| |||||| |||||| |
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|
| T |
3217153 |
tcgaattgatagaacctcctccttctcttctagagccttggcttct |
3217198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 3232106 - 3232142
Alignment:
| Q |
204 |
gtgaattcacaatggccattccattttgcaggtggtg |
240 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtggtg |
3232142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 3177934 - 3177901
Alignment:
| Q |
205 |
tgaattcacaatggccattccattttgcaggtgg |
238 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtgg |
3177901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 3240906 - 3240939
Alignment:
| Q |
205 |
tgaattcacaatggccattccattttgcaggtgg |
238 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtgg |
3240939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 3221873 - 3221909
Alignment:
| Q |
204 |
gtgaattcacaatggccattccattttgcaggtggtg |
240 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
3221873 |
gtgaattcgcaatggcctttccattttgcaggtggtg |
3221909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 3226855 - 3226891
Alignment:
| Q |
204 |
gtgaattcacaatggccattccattttgcaggtggtg |
240 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |
|
|
| T |
3226855 |
gtgaattcacaatgacctttccattttgcaggtggtg |
3226891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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