View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_16 (Length: 436)
Name: NF12841_high_16
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 32593190 - 32593599
Alignment:
| Q |
14 |
cacaaacaacacaacagatatcaaaaccacatttaaaatttataagggtgtttgtaagcaatataatgtataattcacttttaatcatattttcagtaaa |
113 |
Q |
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| T |
32593190 |
cacaaacaacaccacagatatcaaaaccacatttaaaatttataagggtgtttgtaagcaatataatgtataattcacttttaatcatattttcagtaaa |
32593289 |
T |
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| Q |
114 |
aacgaaaaagaattttgagagnnnnnnncggattacgctaaccatggtaacaagagtgaagaaacacacaattcaaccaaattttaattagaatatatga |
213 |
Q |
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| T |
32593290 |
aacgaaaaagaattttgagagaaaaaaacggattacactaaccatggtaacaagagtgaagaaacacacaattcaaccaaattttaattagaatatatga |
32593389 |
T |
|
| Q |
214 |
atcatttcaaaactcgaatttgaattagaatacatgaatcagttcaaaacccgcacttccattttctacacatggagcagcattcagcgatagcccatat |
313 |
Q |
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| T |
32593390 |
atcatttcaaaactcgaattttaattagaatacatgaatcagttcaaaactcgcacttccattttctacacatgaagcagcattcagtgatagcccatat |
32593489 |
T |
|
| Q |
314 |
caaagggccaaagcaaaataatgcctcataatatttagtactagatgcatgtagttatctgatttatctcaccttgccatcagatcctggtgatacagga |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32593490 |
caaagggccaaagcaaaataatgcctcataatatttagtactacatgcatgtagttatctgatttatctcaccttgccatcagatcctggtgatacagga |
32593589 |
T |
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| Q |
414 |
aacgccgcct |
423 |
Q |
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| T |
32593590 |
aaagccgcct |
32593599 |
T |
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