View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_17 (Length: 435)
Name: NF12841_high_17
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 38885918 - 38886326
Alignment:
| Q |
18 |
aggactagctacaatattataatttattatgtgaatataaaagttattaagtaccnnnnnnngtaaggtagaatttaattcctttccacctctcaacaag |
117 |
Q |
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| T |
38885918 |
aggactagctacaatattataatttattatgttaatataaaagttattaagtaccaaaaaaagtaaggtagaatttaattcctttccacctctcaacaag |
38886017 |
T |
|
| Q |
118 |
aagtggcatgagggtagcaaccctttagaagagacaagttcttcttttctcaatcttattatttatttcaactactttaaatatccatctcttaactcaa |
217 |
Q |
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| T |
38886018 |
aagtggcatgagggtagcaaccctttagaagagacaagttcttcttttctcaatcttattatttatttcaactactttaaatatccatctcttaactcaa |
38886117 |
T |
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| Q |
218 |
gctatctctctctttgtctccctcttttggtttctgtttcatttc-tttatacatagaaatggaataagggaggtacataagaaaatgactcagtgtagt |
316 |
Q |
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| T |
38886118 |
gctatctctctctttgtctccctcttttggtttctgtttcatttcttttatacatagaaatggaataagggaggtacataagaaaatgactcagtgtagt |
38886217 |
T |
|
| Q |
317 |
taccctgaaaataatcatagtactatccttatggagagacgcaaagatagcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatc |
416 |
Q |
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| T |
38886218 |
taccctgaaaataatcatagtactatccttatggagagacgcaaagatagcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatc |
38886317 |
T |
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| Q |
417 |
aggttcttc |
425 |
Q |
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| T |
38886318 |
aggttcttc |
38886326 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 30504521 - 30504578
Alignment:
| Q |
365 |
agcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggttc |
422 |
Q |
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| T |
30504521 |
agcttaattagaacttgtctcacatgtggtcatcatatcaaaggccaagatcaggttc |
30504578 |
T |
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