View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_19 (Length: 421)
Name: NF12841_high_19
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 18642044 - 18641648
Alignment:
| Q |
17 |
aaattacaggtaatacttgttcctgaaatgcagttagagatttggtcggaacatgcatattacaacatcagaatcactcaataaaagcatgcctagaaaa |
116 |
Q |
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| T |
18642044 |
aaattacaggtaatacttgttcctgaaatgcagttagagatttggtcggaacatgcatattacaacatcagaatcactcaataaaagcatgcctagaaaa |
18641945 |
T |
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| Q |
117 |
gaaacggaaaacgaagaacaccgctccttgtataattatctcttttaaggattcttacaagtttacaatcttattatttctcagaggttcattaggattt |
216 |
Q |
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| T |
18641944 |
gaaacggaaaacgaagaacaccgctccttgtataattatctcttttaaggattcttacaagtttacaaccttattatttctcagaggttcattaggattt |
18641845 |
T |
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| Q |
217 |
ggtgaggaagcattacaatctcttccagggaaagttggatcacaggtgtttattgttttctacatctgaatagagtttggttatactatctgagcaatca |
316 |
Q |
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| T |
18641844 |
ggtgaggaagcattacaatctcttccagggaaagttggatcacaggtgtttattgttttctacatctgaatagagtttggttatactatctgagcaatca |
18641745 |
T |
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| Q |
317 |
tatactttataagctaattccataactaccgtggactttctagctgaatatttattttagcttttcactgtaggatgtcaatgatgttctctctgct |
413 |
Q |
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| T |
18641744 |
tatactttataagctaattccataactaccgtggactttctagctgaatatttattttagcttttcactgtaggatgtcaatgatgttctctctgct |
18641648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 18631184 - 18631119
Alignment:
| Q |
198 |
cagaggttcattaggatttggtgaggaagcattacaatctcttccagggaaagttggatcacaggt |
263 |
Q |
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| T |
18631184 |
cagaggttcattaggatttggagaggaagccttacaatctcttccggggaatattggatctcaggt |
18631119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 15092725 - 15092790
Alignment:
| Q |
198 |
cagaggttcattaggatttggtgaggaagcattacaatctcttccagggaaagttggatcacaggt |
263 |
Q |
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| T |
15092725 |
cagaggttcattaggatttggagaggaagccttacaatctcttccggggaatattggatctcaggt |
15092790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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