View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_22 (Length: 402)
Name: NF12841_high_22
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 28908373 - 28907986
Alignment:
| Q |
1 |
tggctagctgcaggaggccagctgattgcttcccgtttcgagcagaatgatgttagaagtttattacctgtagaaagtgaggtaaaatctcttaaattgg |
100 |
Q |
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| T |
28908373 |
tggctagctgcaggaggccagctgattgcttcccgtttcgagcagaatgatgttagaagtttattacctgtagaaagtgaggtaaaatctcttaaattgg |
28908274 |
T |
|
| Q |
101 |
ttgcagccctgtaacttcgttagttgcacatggtcataaatttttatccttagaatctatgaagcacctactctgacactgacacctgtagttttgccat |
200 |
Q |
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| T |
28908273 |
ttgcagccctgtaacttcgttagttgcacatggtcataaatttttatccttagaatctatgaagcacctactctgacactgacacctgtagttttgccat |
28908174 |
T |
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| Q |
201 |
ttacaattttttatttggagttgacgtacaaacttagtagttactgaattttggatgtcatcttttacagacagatgatctgcaagatcatatcattatt |
300 |
Q |
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| T |
28908173 |
ttacatttttttatttggagttgacgtacaaacttagtagttactgaattttggatgtcatcttttacagacagatgatctgcaagatcatatcattatt |
28908074 |
T |
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| Q |
301 |
tgtggatttggacgagttggccaggtaaattctctatattttggtttgcttagttagtttacataagtgtgctggaatttacctttgt |
388 |
Q |
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| T |
28908073 |
tgtggatttggacgagttggccaggtaaattctctatattttggtttgcttagttagtttacataaatgtgctggaatttacctttgt |
28907986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 11847826 - 11847897
Alignment:
| Q |
12 |
aggaggccagctgattgcttcccgtttcgagcagaatgatgttagaagtttattacctgtagaaagtgaggt |
83 |
Q |
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| T |
11847826 |
aggaggccagctgattgcttcccgttttgagcaacatgatgttcgaagcttactacctgtagaaagtgaggt |
11847897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 11848163 - 11848228
Alignment:
| Q |
261 |
tcttttacagacagatgatctgcaagatcatatcattatttgtggatttggacgagttggccaggt |
326 |
Q |
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| T |
11848163 |
tctttttcagacagacgatctgcgtgatcatatcattatttgtggatttgggcgagttggccaggt |
11848228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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