View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_3 (Length: 658)
Name: NF12841_high_3
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 7 - 642
Target Start/End: Complemental strand, 937660 - 937025
Alignment:
| Q |
7 |
gcagcacagacagacgtgattgtacacaatgcaacaagaaagaacgacaacataatgatttcataattcatccgcgtctctagtctacttctttttgatg |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
937660 |
gcagcacaaacagacgtgattgtacacaatgcaacaagaaagaacgacaacataatgatttcataattcatccgcgtctctagtctacttcttttcgatg |
937561 |
T |
|
| Q |
107 |
gagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagcac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937560 |
gagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagcac |
937461 |
T |
|
| Q |
207 |
aatgttggttgatccaagtgataacttcttaccatcgatttccatattcgccataaatccatatatattcctattcggtttctcacacttgatcaaacca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937460 |
aatgttggttgatccaagtgataacttcttaccatcgatttccatattcgccataaatccatatatattcctattcggtttctcacacttgatcaaacca |
937361 |
T |
|
| Q |
307 |
gtatacctcggttgaacctttgaacctgtctcctgtttcgcatacctagtcttcaaattactctcaccatcaagattaatagtttgcacatatgcaacac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937360 |
gtatacctcggttgaacctttgaacctgtctcctgtttcgcatacctagtcttcaaattactctcaccatcaagattaatagtttgcacatatgcaacac |
937261 |
T |
|
| Q |
407 |
cagttggatcactagttgataacaaaacaatatcacaaggaattgtttcattcgttttgatttttacaatctcaccaacacgaatatccttccatttctt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937260 |
cagttggatcactagttgataacaaaacaatatcacaaggaattgtttcatttgttttgatttttacaatctcaccaacacgaatatccttccatttctt |
937161 |
T |
|
| Q |
507 |
ctcaatgaaactaccgtcattcatcaaaattgttgctaacctgttattctcaactttatctgaattgtgtctcctccaatcctcaaaagcatctttcaca |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
937160 |
ctcaatgaaactaccgtcattcatcaaaattgttgctaacctgttattctcaactttatctgaattgtgtctcctccaatcttcaaaagcatctttcaca |
937061 |
T |
|
| Q |
607 |
ccagtaacaaacagaacaaaagccaacggtagaatc |
642 |
Q |
| |
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| T |
937060 |
ccagtaacaaacagaacaaaagccaacggtagaatc |
937025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 106 - 629
Target Start/End: Complemental strand, 16942045 - 16941519
Alignment:
| Q |
106 |
ggagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagca |
205 |
Q |
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||||||||||| ||||| ||||||||||| ||||| || |||||||| || |||||||||| | ||| ||||||||||||| |||||||||||||| | |
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| T |
16942045 |
ggagctcctgagttgttgagcatagcttttgtctcacgaccacaatacacggcaacaccaaccacacaattagtattcttaagttcacatcctctaagta |
16941946 |
T |
|
| Q |
206 |
caatgttggttgatccaagtgataacttcttaccatcgatttccatattcgccataaatccatatatattcctattcggtttctcacacttgatcaaacc |
305 |
Q |
| |
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|||| || | || |||||||| || |||| |||| | ||||| | ||| ||||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
16941945 |
caatattcgaggaaccaagtgacaatctcttttcatcaacctccattgtagcctgaaatccatatatattcctatttggtttctcgcacttaatcaaacc |
16941846 |
T |
|
| Q |
306 |
agtatacctcggtt------gaacctttgaacctgtctcctgtttcgcatacctagtcttcaaattactctcaccatcaagattaatagtttgcacatat |
399 |
Q |
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| || ||||| | ||| ||| | ||||| ||||| ||||| ||||||||||||||| ||||||||| ||||||| |||||| || || |
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| T |
16941845 |
actaaacctctccttttcatgaaacttaaattgagtctcttgttttgcatatctagtcttcaaattagactcaccatctagattaagagtttgaacgtaa |
16941746 |
T |
|
| Q |
400 |
gcaacaccagttggatcactagttgataacaaaacaatatcacaaggaattgtttcattcgttttgatttttacaatctcaccaacacgaatatccttcc |
499 |
Q |
| |
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||||||||||| |||||||| || || |||||||||| |||||||||||| | |||||| | |||||||| | ||||||||||| | |||||| |||| |
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| T |
16941745 |
gcaacaccagtaggatcactcgtcgacaacaaaacaaaatcacaaggaatcggttcatttgcattgattttaatgatctcaccaactctaatatctttcc |
16941646 |
T |
|
| Q |
500 |
atttcttctcaatgaaactaccgtcattcatcaaaattgttgctaacctgttattctcaactttatctgaattgtgtctcctccaatcctcaaaagcatc |
599 |
Q |
| |
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||||||||||||||||| || |||| | ||||| | ||||||| |||||||||||||||||||| | |||||||||||||||||| | ||||| |
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| T |
16941645 |
atttcttctcaatgaaatgac---cattaaccaaaaccaatcctaacctattattctcaactttatctgatctatgtctcctccaatcctcatatgcatc |
16941549 |
T |
|
| Q |
600 |
tttcacaccagtaacaaacagaacaaaagc |
629 |
Q |
| |
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||||||| ||||||||| ||||||||||| |
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| T |
16941548 |
tttcacagcagtaacaagaagaacaaaagc |
16941519 |
T |
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