View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12841_high_32 (Length: 317)

Name: NF12841_high_32
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12841_high_32
NF12841_high_32
[»] chr1 (1 HSPs)
chr1 (10-300)||(44968590-44968879)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 44968879 - 44968590
Alignment:
Q  10 gcacagaaagatgaacaatactccaacataagaaagacaatgtactaaatcaaatatgttttcttagttacgaaattatcaagacacgtgcatttgtgac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  44968879 gcacagaaagatgaacaatactccaacataagaaagacaatgtactaaatcaa-tatgttttcttagttacgaaattatcaagacacatgcatttgtgac 44968781  T
Q  110 gcgtgtaatannnnnnnnatcgtttactgctttgagaaaatttatccaacaaacaagaagatgcaatgaaccactactattaaaagcatagattcaattt 209  Q
    ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  44968780 gcgtgtaatatattttttatcgtttactgctttgagaaaatttatccaacaaacaagaagatgcaatgaactactactactaaaagcatagattcaattt 44968681  T
Q  210 ccaatcttaatgtctcgttagaatatgaatatcccaaacaagaaaacaaatataggaaatggatccaataagtgtcccaacaataacacct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44968680 ccaatcttaatgtctcgttagaatatgaatatcccaaacaagaaaacaaatataggaaatggatccaataagtgtcccaaccataacacct 44968590  T

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