View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_39 (Length: 259)
Name: NF12841_high_39
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 246
Target Start/End: Original strand, 17722097 - 17722212
Alignment:
| Q |
129 |
aagactctagtgtgattatataagatatttgatatatgaaaaacatgaaaaaataaataattcaaaagacgttggcttagaaaaagcagtggaagacttt |
228 |
Q |
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| T |
17722097 |
aagattctagtgtgattata--agatatttgctattggaaaaacatgaaaaaagaaataattcaaaagacgttggcttggaaaaagcaatggaagacttt |
17722194 |
T |
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| Q |
229 |
gaatttggaagtcagtga |
246 |
Q |
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| T |
17722195 |
gaattttgaaatcagtga |
17722212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 246
Target Start/End: Original strand, 19023326 - 19023441
Alignment:
| Q |
129 |
aagactctagtgtgattatataagatatttgatatatgaaaaacatgaaaaaataaataattcaaaagacgttggcttagaaaaagcagtggaagacttt |
228 |
Q |
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| T |
19023326 |
aagattctagtgtgattata--agatatttgctattggaaaaacatgaaaaaagaaataattcaaaagacgttggcttggaaaaagcaatggaagacttt |
19023423 |
T |
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| Q |
229 |
gaatttggaagtcagtga |
246 |
Q |
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| T |
19023424 |
gaattttgaaatcagtga |
19023441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 19460481 - 19460421
Alignment:
| Q |
70 |
aaatgattgcaattgatttcatttactatttctagttcaaattggtatgtcattgttagaa |
130 |
Q |
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| T |
19460481 |
aaatgaatgtaattgatttcatttactatttcaagttcaaattggtatgtcattgttagaa |
19460421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 17721921 - 17721968
Alignment:
| Q |
23 |
accggactattttaagtttagaagaaccaaactaaattgattttgaga |
70 |
Q |
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| T |
17721921 |
accggaatattttaagtttagaagaaccaaactaaattgattttgaga |
17721968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 19023150 - 19023197
Alignment:
| Q |
23 |
accggactattttaagtttagaagaaccaaactaaattgattttgaga |
70 |
Q |
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| T |
19023150 |
accggaatattttaagtttagaagaaccaaactaaattgattttgaga |
19023197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 16676281 - 16676172
Alignment:
| Q |
122 |
ttgttagaagactctagtgtgattatataagatatttgatatatgaaaaacatgaaaaaataaataattcaaaagacgttggcttagaaaaagcagtgga |
221 |
Q |
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||||||| ||| ||||||||||||||||||||||||| || | ||| |||||||||| |||||| ||||||| |||| | |||||| ||| ||| |
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| T |
16676281 |
ttgttaggagaatctagtgtgattatataagatatttcctaatgggaaagcatgaaaaaagaaataacacaaaagaaaatggcatggaaaaaacagggga |
16676182 |
T |
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| Q |
222 |
agactttgaa |
231 |
Q |
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|||||||||| |
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| T |
16676181 |
agactttgaa |
16676172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 18114744 - 18114706
Alignment:
| Q |
208 |
gaaaaagcagtggaagactttgaatttggaagtcagtga |
246 |
Q |
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| T |
18114744 |
gaaaaaacagtggaagactttgaattttgaagtcagtga |
18114706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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