View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12841_high_45 (Length: 242)

Name: NF12841_high_45
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12841_high_45
NF12841_high_45
[»] chr6 (3 HSPs)
chr6 (1-89)||(23593511-23593599)
chr6 (185-227)||(23593644-23593686)
chr6 (121-158)||(23593617-23593654)
[»] chr1 (4 HSPs)
chr1 (1-89)||(51050886-51050974)
chr1 (121-158)||(51050832-51050869)
chr1 (1-43)||(3788942-3788984)
chr1 (173-227)||(37689689-37689742)
[»] chr4 (3 HSPs)
chr4 (1-89)||(28123782-28123870)
chr4 (173-227)||(28123942-28123996)
chr4 (121-158)||(28123888-28123925)
[»] chr8 (1 HSPs)
chr8 (1-43)||(1487956-1487998)
[»] chr5 (1 HSPs)
chr5 (173-227)||(30003324-30003377)
[»] chr3 (1 HSPs)
chr3 (1-43)||(50306022-50306064)
[»] chr2 (1 HSPs)
chr2 (1-43)||(26021410-26021452)


Alignment Details
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23593511 - 23593599
Alignment:
Q  1 attattgagttgaaataggtgaagttacaagcataaggaattttccatacccatgtcaatgggtcttgaatcttacaagcataagttac 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23593511 attattgagttgaaataggtgaagttacaagcataaggaattttcgatacccatgtcaatgggtcttgaatcttacaagcataagttac 23593599  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 23593644 - 23593686
Alignment:
Q  185 atgaagattgttttttattaattggttccattaaaagcctgtt 227  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  23593644 atgaagattgatttttattaattggttccattaaaagcctgtt 23593686  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 23593617 - 23593654
Alignment:
Q  121 tggatttaggttcctttgattgaagctatgaagattga 158  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23593617 tggatttaggttcctttgattgaagctatgaagattga 23593654  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 51050974 - 51050886
Alignment:
Q  1 attattgagttgaaataggtgaagttacaagcataaggaattttccatacccatgtcaatgggtcttgaatcttacaagcataagttac 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51050974 attattgagttgaaataggtgaagttacaagcataaggaattttcgatacccatgtcaatgggtcttgaatcttacaagcataagttac 51050886  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 51050869 - 51050832
Alignment:
Q  121 tggatttaggttcctttgattgaagctatgaagattga 158  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51050869 tggatttaggttcctttgattgaagctatgaagattga 51050832  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3788984 - 3788942
Alignment:
Q  1 attattgagttgaaataggtgaagttacaagcataaggaattt 43  Q
    ||||||| |||||||| |||||||||||||||||||| |||||    
T  3788984 attattgcgttgaaatgggtgaagttacaagcataagaaattt 3788942  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 37689689 - 37689742
Alignment:
Q  173 agattgcaactcatgaagattgttttttattaattggttccattaaaagcctgtt 227  Q
    |||||||||||||||||||||| |||| | ||||||||||||| |||||| ||||    
T  37689689 agattgcaactcatgaagattgattttga-taattggttccataaaaagcatgtt 37689742  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 28123782 - 28123870
Alignment:
Q  1 attattgagttgaaataggtgaagttacaagcataaggaattttccatacccatgtcaatgggtcttgaatcttacaagcataagttac 89  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  ||||| || ||||||||||||||||||||||||||||||||||    
T  28123782 attattgagtttaaataggtgaagttacaagcataaggaatttttgatacctatctcaatgggtcttgaatcttacaagcataagttac 28123870  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 28123942 - 28123996
Alignment:
Q  173 agattgcaactcatgaagattgttttttattaattggttccattaaaagcctgtt 227  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||| ||||    
T  28123942 agattccaactcatgaagattgctttttattaattgggtccataaaaagcttgtt 28123996  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 28123888 - 28123925
Alignment:
Q  121 tggatttaggttcctttgattgaagctatgaagattga 158  Q
    |||||||||||||||||||||||||||| |||||||||    
T  28123888 tggatttaggttcctttgattgaagctaagaagattga 28123925  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1487956 - 1487998
Alignment:
Q  1 attattgagttgaaataggtgaagttacaagcataaggaattt 43  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  1487956 attattgagttgaaatgggtgaagttacaagcataagaaattt 1487998  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 30003324 - 30003377
Alignment:
Q  173 agattgcaactcatgaagattgttttttattaattggttccattaaaagcctgtt 227  Q
    |||||||||||||||||||||| |||| | ||||||||||||| |||||| ||||    
T  30003324 agattgcaactcatgaagattgattttga-taattggttccataaaaagcatgtt 30003377  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 50306022 - 50306064
Alignment:
Q  1 attattgagttgaaataggtgaagttacaagcataaggaattt 43  Q
    ||||||| |||||||| |||||||||||||||||||| |||||    
T  50306022 attattgcgttgaaatgggtgaagttacaagcataagaaattt 50306064  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26021410 - 26021452
Alignment:
Q  1 attattgagttgaaataggtgaagttacaagcataaggaattt 43  Q
    ||||||| |||||||| |||||||||||||||||||| |||||    
T  26021410 attattgcgttgaaatgggtgaagttacaagcataagaaattt 26021452  T

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