View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_5 (Length: 570)
Name: NF12841_high_5
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 6 - 556
Target Start/End: Complemental strand, 37055627 - 37055077
Alignment:
| Q |
6 |
aggagcagagaagtaaagaaggcctggtacaactacaactgccaaaggttcaggggttccctgctttgcttggagtagcattaaagacagtactgtttca |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37055627 |
aggaacagggaagtaaagaaggcctggtacaactacaactgccaaaggttcaggggttccctgctttgcttggagtagcattaaagacagtactgtttca |
37055528 |
T |
|
| Q |
106 |
gatcttattttcattcaccagcactaaccaaatgaaaaaatattcannnnnnnngatgnnnnnnnnnnnnnggaaacaagcttttataagaggaaagctg |
205 |
Q |
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| T |
37055527 |
gatcttattttcattcaccagcactaaccaaatgaaaaaatattcatttttttttatgaaaaaaacaaaaaggaaacaagcttttataagaggaaagctg |
37055428 |
T |
|
| Q |
206 |
cattaacttttagttggaagaaagaaaaagaaaatgagttgtggttctgagcttcttaccatgatcttcatcatcattatcacactcttggttcctttat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37055427 |
cattaacttttagttggaagaaagaaaaagaaaatgagttgtggttctgagcttcttaccatgatcttcatcatcattatcacactcttggttcctttat |
37055328 |
T |
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| Q |
306 |
catcatcacaaaggactcacattttgagtgttggtgctttaatcaatgcagctggaagcttccatgttcatactttacaagataactattacatgaaaga |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37055327 |
catcatcacaaaggactcacattttgagtgttggtgctttaatcaatgcagctggaagcttccatgttcatactttacaagataactattacatgaaaga |
37055228 |
T |
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| Q |
406 |
acaagaaaatgaaaagaagcaggttcagaaaatctcaggtttagatgagaatgaagagaaacaaggttttatagttgaaaagtttagatctttacttggt |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37055227 |
acaagaaaatgaaaagaagcaggttcagaaaatctcaggtttagatgagaatgaagagaaacaaggttttatagttgaaaagtttagatctttacttggt |
37055128 |
T |
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| Q |
506 |
ttaaagagtttccacaaaagggtaccttctaaatccaatggtgattctgat |
556 |
Q |
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| T |
37055127 |
ttaaagagtttccacaaaagggtaccttctaaatccaatggtgattctgat |
37055077 |
T |
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