View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_52 (Length: 209)
Name: NF12841_high_52
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_52 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 3934140 - 3934315
Alignment:
| Q |
14 |
atgaatatgaatctaggtgatttaattacctaaaatatttaaacaaatctcctgataataatgcatcgggcctaatcaattttgtagagaagtaaaggat |
113 |
Q |
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| T |
3934140 |
atgaatatgaatc-aggtgatttaattacctaaaatatttaaacaaatctcctgataataatgcatcgggcctaatcaattttgtagagaagtaaaggat |
3934238 |
T |
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| Q |
114 |
cctctcacataggaaaaagaccaca-ctggaatagtgatattccatcaatgatttatatattaaacaatataaggat |
189 |
Q |
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| T |
3934239 |
cctctcacataggaaaaagaccacacctggaatagtgatattccatcaatgatttatatattaaacaatataaggat |
3934315 |
T |
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