View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_6 (Length: 511)
Name: NF12841_high_6
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 13 - 499
Target Start/End: Complemental strand, 1406707 - 1406222
Alignment:
| Q |
13 |
taggcgtagagaccgacctgatttgttagatcacgtgcttccaacgctggagaggttgaaagaagttgctgatagggctcatcattcagcttcaatggtt |
112 |
Q |
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| T |
1406707 |
taggcgtagagaccgacctgatttgttagatcacgtgcttccaacgctggagaggttgaaagaagttgctgatagggctcatcattcagcttcaatggtt |
1406608 |
T |
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| Q |
113 |
gctattaaacccaaacctccaaaccatttcatttgccctatacttcaggtagtcaaataatactccatgatggaactacattcattttctaatctactat |
212 |
Q |
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| T |
1406607 |
gctattaaacccaaacctccaaaccatttcatttgccctatacttcaggtagtcaaataatactccatgatggcactacattcattttctaatctactat |
1406508 |
T |
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| Q |
213 |
tagtgctaattatttgttatgagttagttaatcctttctgagttgttagtgctagttatatcagttagtannnnnnnatgtcagttgggagtaattattt |
312 |
Q |
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| T |
1406507 |
tagtgctaattatttgttatgagtttgttaatcctttctgagttgttagttctagttatatcagttagta-ttttttatgtcagttgggagtaattattt |
1406409 |
T |
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| Q |
313 |
gaattagtagaactaatgaccgttttataactagaagaatggagatttgaactccgtcccttaaagttacaaagtcaaactattaccactggactaacac |
412 |
Q |
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| T |
1406408 |
gaattagtagaactaatgaccgttttataactagaagaatggagatttgaactccgtcccttaaagttacaaagtcaaactattaccactggactaacac |
1406309 |
T |
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| Q |
413 |
cttgtggacaataggttgttaatattttggatgatgcttatcatacttcatatgatttgatgcaggatgtgatggatgatccttgtg |
499 |
Q |
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| T |
1406308 |
ctcgtggacaataggttgttaatattttggatgatgcttatcatacttcatatgatttgatgcaggatgtgatggatgatccttgtg |
1406222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 1398488 - 1398332
Alignment:
| Q |
15 |
ggcgtagagaccgacctgatttgttagatcacgtgcttccaacgctggagaggttgaaagaagttgctgatagggctcatcattcagcttcaatggttgc |
114 |
Q |
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|||||| ||| |||||||||||| || || || || |||| ||| |||||| |||||||||||||||||| |||||| ||||| |||||||| ||| | |
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| T |
1398488 |
ggcgtaaagatcgacctgatttgaatgaccatgtcctaccaatgctagagaggctgaaagaagttgctgataaggctcaacattctgcttcaatagttac |
1398389 |
T |
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| Q |
115 |
tattaaacccaaacctccaaaccatttcatttgccctatacttcaggtagtcaaata |
171 |
Q |
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| T |
1398388 |
tataaaatccagacctccaaatcattttatatgccctatacttcaggtagtcaaata |
1398332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 499
Target Start/End: Complemental strand, 1398076 - 1398044
Alignment:
| Q |
467 |
atttgatgcaggatgtgatggatgatccttgtg |
499 |
Q |
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| T |
1398076 |
atttgatgcaggatgtgatggacgatccttgtg |
1398044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 52511882 - 52511926
Alignment:
| Q |
354 |
gagatttgaactccgtcccttaaagttacaaagtcaaactattac |
398 |
Q |
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| T |
52511882 |
gagatttgaactctgtctcttaaaattacaaagtcaaactcttac |
52511926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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