View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_high_8 (Length: 498)
Name: NF12841_high_8
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 479
Target Start/End: Original strand, 5441378 - 5441847
Alignment:
| Q |
12 |
gcataggcaaatagataatgactcacaaattgaatgctatcaatcttctcaagttgtaactacatagtgatgttcatttggatcaggtatgggaggttac |
111 |
Q |
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| T |
5441378 |
gcataggcaaatagataatgactcataaattgaatgctatctatcttctcaagttgtaactacatattgatgttcatttggatcaggtatgggaggttac |
5441477 |
T |
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| Q |
112 |
ccattctatcaactttatagatatgttcatagttattgtatggtattacacttgatgaatatgtgacattcacattcctttcagccaacaataacaattt |
211 |
Q |
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| T |
5441478 |
ccattctatcaactttatagatatgttcatagttattgtatggtattacacttgatgaatatgtgacattcacattcctttcagccaacaataataattt |
5441577 |
T |
|
| Q |
212 |
aaaaaat---aaattttnnnnnnnnngagtggtattctctttgccttggtagatagtcnnnnnnnnnnnnnnngaaaattggaagaaaataaaaagtgtt |
308 |
Q |
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| T |
5441578 |
aaaaaataaaaaaaaaaaaaaaaaaagagtggtattctctttgccttggtagatagtc-tttttttcttttttgaaaattggaagaaaataaaaagtgtt |
5441676 |
T |
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| Q |
309 |
aacatttagaagtaggacagtggtccaacaactttaaagtaccagcaatacataatttctctttcccacccaaagaagcataaaattaatctttgcaata |
408 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5441677 |
aacgtttagaagtaggatagtggtccaacaactttaaagtaccagcaatacatagtttctctttcccacccaaagaagcataaaattaatctttgcaata |
5441776 |
T |
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| Q |
409 |
ttgattaaagagtattgttcaatttaactcaatattatcatttatgtccggttagtttggttaattggaca |
479 |
Q |
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| T |
5441777 |
ttgattaaagagtattgttcaatttaactcaatattatcttttatgtccggttagtttggttaattggaca |
5441847 |
T |
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