View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12841_high_9 (Length: 475)
Name: NF12841_high_9
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 15778627 - 15778170
Alignment:
| Q |
1 |
gaaggttgctctatggtgtgttcagtattcaccaaatgatagacctctaatgagtactgttgtgaagatgttagagggtgaaattgatatttcttcacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15778627 |
gaaggttgctctatggtgtgttcagtattcaccaaatgatagacctctaatgagtactgttgtaaagatgttagagggtgaaattgaaatttcttcacct |
15778528 |
T |
|
| Q |
101 |
aaatttcccttccataatctggctcctgttaaagaaaatttgacacaagaaggaagcactgcagattctgatgctactatatcatcgtggaatacagaat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15778527 |
ccatttcccttccataatctggttcctgttaaagaaaatttgacacaagaaggaagcactgcagattctgatgctactatatcatcgtggaatacagaat |
15778428 |
T |
|
| Q |
201 |
cttttagcgaatcttgctcaaaaatcaaacatgaatcatttcagattgaaaaacctacttagtgcatgtttggaatcaaggtggctttaacgaaatcacg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15778427 |
cttttagcgaatcttgctcaaaaatcaaacatgaatcatttcagattgaaaaacctacttagtgcatgtttggaatcaaggtggctttaacgaaatcacg |
15778328 |
T |
|
| Q |
301 |
tttcacggaagcactgtgggttagttgaagctatgatgtacggcttgtgtcacattcattgtcggtgcaccataatttcgccaaacaccaccaatctaaa |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15778327 |
tttcacggaagcactgtggattagttgaagctatgatgtacggcttgtgtcacattcattgtcggtgcaccatgatttcgccaaacaccaccaatctaaa |
15778228 |
T |
|
| Q |
401 |
catgcacttagatgtatcatggcagtacagagaaaaaagaaacttgtgctatgaaact |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
15778227 |
catgcacttagatgtatcatggcagtacagagaaaaaagaagcttgttctatgaaact |
15778170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 15793494 - 15793695
Alignment:
| Q |
2 |
aaggttgctctatggtgtgttcagtattcaccaaatgatagacctctaatgagtactgttgtgaagatgttagagggtgaaattgatatttcttcaccta |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15793494 |
aaggttgctctatggtgtgttcaatattcaccaaatgatagacctctaatgagtactgttgtgaagatgttagagggtgaaattgatatttcttcacctc |
15793593 |
T |
|
| Q |
102 |
aatttcccttccataatctggctcctgttaaagaaaatttgacacaagaaggaagcactgcagattctgatgctactatatcatcgtggaatacagaatc |
201 |
Q |
| |
|
|||||| || |||||||||| ||||| ||||||||||| ||||||||| ||||| ||||||||||||||| | |||| |||||| ||| ||| ||||| |
|
|
| T |
15793594 |
catttccttttcataatctggttcctgctaaagaaaattcgacacaagagggaagtactgcagattctgatacgactacatcatcatggcgtaccgaatc |
15793693 |
T |
|
| Q |
202 |
tt |
203 |
Q |
| |
|
|| |
|
|
| T |
15793694 |
tt |
15793695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 15789296 - 15789559
Alignment:
| Q |
2 |
aaggttgctctatggtgtgttcagtattcaccaaatgatagacctctaatgagtactgttgtgaagatgttagagggtgaaattgatatttcttca-cct |
100 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| || |||| | || || |
|
|
| T |
15789296 |
aaggttgctcaatggtgtgttcaatattcaccagatgatagacctttaatgagtactgttgtgaagatgttggagggtgaaaaagaaattt-tacaggct |
15789394 |
T |
|
| Q |
101 |
aaatttcccttccataatctggctcctgttaaagaaaatttgacacaagaaggaagcactgcagattctgatgctactatatcatcgtggaatacagaat |
200 |
Q |
| |
|
||||||||||||||||| || | | ||||||||||||| ||||||||| || ||||||||| ||||| || || | | ||||| ||| ||||| ||| |
|
|
| T |
15789395 |
ccatttcccttccataatcgggtttcggttaaagaaaattcgacacaagaggggagcactgcatattctaatactgcaacctcatcatggcatacataat |
15789494 |
T |
|
| Q |
201 |
cttttagcgaatcttgctcaaaaatcaaacatgaatcatttcagattgaaaaacctacttagtgc |
265 |
Q |
| |
|
|||| || |||||| | | | | |||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
15789495 |
ctttgagagaatctggtttcagagccaaacaaaatacatttcagattgaaaaacctacttagtgc |
15789559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University