View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_1 (Length: 798)
Name: NF12841_low_1
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 713; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 18 - 798
Target Start/End: Complemental strand, 39396864 - 39396085
Alignment:
| Q |
18 |
gtttcaacacttattgtttgcacttggctataacacttttgtcaatatgaaaaaagcgtagaaaattaattgaagttggaaatacaacttcaattgcatt |
117 |
Q |
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| T |
39396864 |
gtttcaacccttattgtttgcacttggctataacacttttgtcaatatgaaaaaagcgtagaaaattaattgaagttggaaatacaacttcaattgcatt |
39396765 |
T |
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| Q |
118 |
catcatgacaaggtctctatcaatcacaataactttagaaattagtctctctgaggtgaactatctaacattttggaatgcccaaataaaattatcttgt |
217 |
Q |
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| T |
39396764 |
catcatgacaaggtctctatcaatcacaataactttagaaattagtctctctgaggtgaactatctaacattttggaatgcccaaataaaattatcttgt |
39396665 |
T |
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| Q |
218 |
tgttcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggttgtttgtacctatttgttttgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396664 |
tgttcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggttgtttgtacctatttgttttgt |
39396565 |
T |
|
| Q |
318 |
gtcaaggatcaatatcaaatgaaacatgttcaataactttactgaatcaagatttgtccaaaatacggcactcgcagcatccaagtcctccctctttctt |
417 |
Q |
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| T |
39396564 |
gtcaaggatcaatatcaaatgaaacatgttcaataacttcactgaatcaagatgtgtccaaaatacggcacttgcaacatccaagtcctccctctttctt |
39396465 |
T |
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| Q |
418 |
gtcaaatacatatactttgcacattctactaagttcaatagctgctgcgttgttgtgtaagaaactctcaaagaagattgataagtactccatgccctta |
517 |
Q |
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| T |
39396464 |
gtcaaatacatatactttgcacattctattaagttcaatagctgctgcatttttgtgtaagaaactctcaaagaagattgataagtactccatg-cctta |
39396366 |
T |
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| Q |
518 |
tatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccaaatatgaatctcattgttgtgtggtactttttcgtatcataatctattt |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39396365 |
tatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccagatatgaatctcattgtcatgtggtactttttcgtatcataatctattt |
39396266 |
T |
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| Q |
618 |
ttcctcttcattcaaatgtcccaaataaggatgaccttttagagtattttctaattcgtcttaggtggtctaaatgattgttttagtttgatttggggga |
717 |
Q |
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| T |
39396265 |
ttcctcttcattcaaatgtcccaaataaggatgaccttttagggtattttctaattcgtcttaggtggtctaaatgattgttttagtttgatttggggga |
39396166 |
T |
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| Q |
718 |
aattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaacaaacagaaacgaactagggtctcaaaata |
798 |
Q |
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| T |
39396165 |
aattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaaccaacagacacgaaatagggtctcaaaata |
39396085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 43598202 - 43598128
Alignment:
| Q |
221 |
tcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggt |
295 |
Q |
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|||||||||||||||||||||||| || |||| | |||||| |||||||||| |||||||| |||||||||| |
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| T |
43598202 |
tcatgttccaaataagcaaaagctaccaaaaacgttaacttcatagatgttacgctaacaatttaaagcaatggt |
43598128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 561
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
487 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
561 |
Q |
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| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
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