View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_11 (Length: 471)
Name: NF12841_low_11
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_11 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 34338475 - 34338926
Alignment:
| Q |
18 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
34338475 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggt-tggttgagttataattgaattggtttaaatttg |
34338573 |
T |
|
| Q |
118 |
tgtttcaactcatgaaccactcaaccattaaaatggttcagnnnnnnnatcattcagtttggttcagcttagtgatatggtttcagttaaccacattttt |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34338574 |
tgtttcaaatcatgaaccactcaaccattaaaatggttcagtttttttatcattcagtttggttcagcttagtgatatggtttcagttaaccacattttt |
34338673 |
T |
|
| Q |
218 |
cacacccctggattcaagcaagtgttggtattattttttgatattcttagcaaggtttaaatctaaagaagtgataaaatattcttagttgattacaagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34338674 |
cacacccctggattcaagcaagtgttggtattatttttttatattcttagcaaggttaaaatctaaagaagtgataaaatattcttagttgattacaagt |
34338773 |
T |
|
| Q |
318 |
tatctgccacaattttgaagattcattgttctttgttgtttgttagacttgtcaaatactaagttgaatttaatttgatggtttcttttctttctcttta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34338774 |
tatctgccacaattttgaagattcattgttctttgttgtttgttagacgtgtcaaatactaagttgaatttaatttgatggtttcttttctttctcttta |
34338873 |
T |
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| Q |
418 |
ccctgtttcttcctgaacaacttttaacttggattatcccttagattatgaaa |
470 |
Q |
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| T |
34338874 |
ccctgtttcttcctgaacaacttttaacttggattatcccttagattatgaaa |
34338926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 6718185 - 6718638
Alignment:
| Q |
18 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
6718185 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattttggtcttgctgagttataattgaattggtttaaatttg |
6718284 |
T |
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| Q |
118 |
tgtttcaactcatgaaccactcaaccattaaaatggttcagnnnnnnnatcattcagtttggttcagcttagtgatatggtttcagttaaccacattttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6718285 |
tgtttcaactcatgaaccactcaaccattaaaatgtttcagtttttttatcattcagtttggttcagcttagtgatatggtttcagttaaccacattttt |
6718384 |
T |
|
| Q |
218 |
cacacccctggattcaagcaagtgttggtattattttttgatattcttagcaaggtttaaatctaaagaagtgataaaatattcttagttgattacaagt |
317 |
Q |
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| T |
6718385 |
cacacccctagattcaagcaagtgttggtattatttttttatattcttagcaaggttaaaatctaaagaagtgataaaatattcttagttgattacaagt |
6718484 |
T |
|
| Q |
318 |
tatctgccacaattttgaagattcattgttctttgttgtttgttagacttgtcaaatactaagttgaatttaatttgatggtttcttttctttctcttta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6718485 |
tatctgccacaattttgaagattcattgttctttgttgtttgttagacgtgtcaaatactaagttgaatttaatttgatggtttcttttctttctcttta |
6718584 |
T |
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| Q |
418 |
ccctgtttcttcctgaacaacttttaacttggattatcccttagattatgaaag |
471 |
Q |
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| T |
6718585 |
ctttgtttcttcctgaacaacttttaacttggattatcccttagattatgaaag |
6718638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 23099545 - 23099999
Alignment:
| Q |
18 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
117 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23099545 |
actaaatctatacaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
23099644 |
T |
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| Q |
118 |
tgtttcaactcatgaaccactcaaccattaaaatggttcagnnnnnnn-atcattcagtttggttcagcttagtgatatggtttcagttaaccacatttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23099645 |
tgtttcaactcatgaaccactcaaccattaaaatggttcagttttttttaccattcagtttcgttcagcttagtgatatggtttcagttaaccacatttt |
23099744 |
T |
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| Q |
217 |
tcacacccctggattcaagcaagtgttggtattattttttgatattcttagcaaggtttaaatctaaagaagtgataaaatattcttagttgattacaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23099745 |
tcacacccctggattcaagcaagtgttggtattatttttttatattcttagcaaggttaaaatctaaagaagtgataaaatattcttagttgattacaag |
23099844 |
T |
|
| Q |
317 |
ttatctgccacaattttgaagattcattgttctttgttgtttgttagacttgtcaaatactaagttgaatttaatttgatggtttcttttctttctcttt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23099845 |
ttatctgccacaattttgaagattcattgttctttgttgtttgttagacgtgtcaaatactaagttgaatttaatttgatggtttcttttctttctcttt |
23099944 |
T |
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| Q |
417 |
accctgtttcttcctgaacaacttttaacttggattatcccttagattatgaaag |
471 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23099945 |
accctatttcttcctgaacaacttttaacttggattatcccttagattatgaaag |
23099999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 27085802 - 27085671
Alignment:
| Q |
18 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27085802 |
actaaatctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
27085703 |
T |
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| Q |
118 |
tgtttcaactcatgaaccactcaaccattaaa |
149 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27085702 |
tgtttcaactcatgaaccactcaaccattaaa |
27085671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 5195172 - 5195081
Alignment:
| Q |
322 |
tgccacaattttgaagattcattgttctttgttgtttgttagacttgtcaaatactaagttgaatttaatttgatggtttcttttctttctc |
413 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5195172 |
tgccacaattgtgaagatgcattgttctttgttgtttgttagatgtgtcaaatactaagttgaatttaatttgatggtttcttttctttctc |
5195081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 5195303 - 5195212
Alignment:
| Q |
227 |
ggattcaagcaagtgttggtattattttttgatattcttagcaaggtttaaatctaaagaagtgataaaatattcttagttgattacaagttatc |
321 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
5195303 |
ggattcaagcaagtgtc---attatttttgtatattcttagcaaggttaaaatctaaagtagtgataaaatattcttagttgatgacaagttatc |
5195212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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