View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12841_low_13 (Length: 465)

Name: NF12841_low_13
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12841_low_13
NF12841_low_13
[»] chr5 (14 HSPs)
chr5 (19-452)||(1042730-1043153)
chr5 (28-150)||(1049116-1049238)
chr5 (206-277)||(1049006-1049077)
chr5 (210-262)||(1045504-1045556)
chr5 (210-267)||(1069950-1070007)
chr5 (368-452)||(1048512-1048595)
chr5 (210-264)||(1064671-1064725)
chr5 (209-262)||(1032485-1032538)
chr5 (209-262)||(1051808-1051861)
chr5 (210-262)||(1644400-1644452)
chr5 (67-126)||(1032638-1032697)
chr5 (67-126)||(1051961-1052020)
chr5 (210-264)||(1057609-1057663)
chr5 (95-127)||(1057762-1057794)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 1043153 - 1042730
Alignment:
Q  19 agaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043153 agaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaa 1043054  T
Q  119 ctctgaaattatgtgaaattatttagcaagagtnnnnnnntattgaaatgaaatagaatacaaaatgaaatggtatatactatgtagtatgtacctatga 218  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  1043053 ctctgaaattatgtgaaattatttagcaagagcaaaaaaaaattgaaatgaaatagaatacaaaatgaaatggtata--ctatgtagtatgtacctatga 1042956  T
Q  219 gctagattgaatttgcccatcttgtaaggtgtaagaagaggaattgaattagtgatgttggcagcttccannnnnnnnnnnnnnnncttttgatgaaaaa 318  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||    
T  1042955 gctagattgaatttacccatcttgtaaggtgtaagaagaggaattgaattagtgatgttggcagcttccatttttttt--------cttttgatgaaaaa 1042864  T
Q  319 tatgtgattcaatatgaagggggttggtttggtgtatggatatttatactatatggtatgttctagaagtggaaatacttttttgtcttattgataaaga 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1042863 tatgtgattcaatatgaagggggttggtttggtgtatggatatttatactatatggtatgttctagaagtggaaatacttttttgtcttattgataaagt 1042764  T
Q  419 aaggtgtgaaaagtcaaatccccacgtctgtgct 452  Q
    |||||||||||||||||||||| |||| ||||||    
T  1042763 aaggtgtgaaaagtcaaatcccaacgtttgtgct 1042730  T

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Target: chr5; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 1049238 - 1049116
Alignment:
Q  28 cctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaactctgaaat 127  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1049238 cctttagaggttctctgagaataatactcgacagcaatggtttgaggaacattgttgtatgatctcattcttgttagcggtgccaaaacaactctgaaat 1049139  T
Q  128 tatgtgaaattatttagcaagag 150  Q
    |||||||||||||||||||||||    
T  1049138 tatgtgaaattatttagcaagag 1049116  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 1049077 - 1049006
Alignment:
Q  206 tatgtacctatgagctagattgaatttgcccatcttgtaaggtgtaagaagaggaattgaattagtgatgtt 277  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||    
T  1049077 tatgtacctatgagctagattgaatttgcccatcttgtaatgtgtaagaagaggaattggatcagtgatgtt 1049006  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 1045556 - 1045504
Alignment:
Q  210 tacctatgagctagattgaatttgcccatcttgtaaggtgtaagaagaggaat 262  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  1045556 tacctatgagatagattgaatttgcccatcttgtaaggagtaagaagaggaat 1045504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 1070007 - 1069950
Alignment:
Q  210 tacctatgagctagattgaatttgcccatcttgtaaggtgtaagaagaggaattgaat 267  Q
    |||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||    
T  1070007 tacctatgagatagattgaatttacccattttgtaaggagtaagaagaggaattgaat 1069950  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 368 - 452
Target Start/End: Complemental strand, 1048595 - 1048512
Alignment:
Q  368 tatatggtatgttctagaagtggaaatacttttttgtcttattgataaagaaaggtgtgaaaagtcaaatccccacgtctgtgct 452  Q
    |||||| |||||||  |||||||| || |||||||||||||||||| ||| ||| |||||||||||||||| |||||| ||||||    
T  1048595 tatatgatatgttccggaagtggatattcttttttgtcttattgat-aagtaagttgtgaaaagtcaaatctccacgtttgtgct 1048512  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 1064725 - 1064671
Alignment:
Q  210 tacctatgagctagattgaatttgcccatcttgtaaggtgtaagaagaggaattg 264  Q
    ||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||    
T  1064725 tacctatgagctagattgaattttctcattttgtaaggagtaagaagaggaattg 1064671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 1032538 - 1032485
Alignment:
Q  209 gtacctatgagctagattgaatttgcccatcttgtaaggtgtaagaagaggaat 262  Q
    |||||||||||  ||| |||| ||||||||||||||||||||||||||||||||    
T  1032538 gtacctatgagagagactgaaattgcccatcttgtaaggtgtaagaagaggaat 1032485  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 1051861 - 1051808
Alignment:
Q  209 gtacctatgagctagattgaatttgcccatcttgtaaggtgtaagaagaggaat 262  Q
    |||||||||||  ||| |||| ||||||||||||||||||||||||||||||||    
T  1051861 gtacctatgagagagactgaaattgcccatcttgtaaggtgtaagaagaggaat 1051808  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 1644400 - 1644452
Alignment:
Q  210 tacctatgagctagattgaatttgcccatcttgtaaggtgtaagaagaggaat 262  Q
    |||||||||| |||||| ||||| |||||||||||||| ||||||||||||||    
T  1644400 tacctatgagatagattaaattttcccatcttgtaaggagtaagaagaggaat 1644452  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 1032697 - 1032638
Alignment:
Q  67 ggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaactctgaaa 126  Q
    ||||||||||| |||   |||||||| ||||| || ||||||||||||||||||||||||    
T  1032697 ggttgaggaacgttgccatatgatcttattctagtgagtggtgccaaaacaactctgaaa 1032638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 1052020 - 1051961
Alignment:
Q  67 ggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaactctgaaa 126  Q
    ||||||||||| |||   |||||||| ||||| || ||||||||||||||||||||||||    
T  1052020 ggttgaggaacgttgccatatgatcttattctagtgagtggtgccaaaacaactctgaaa 1051961  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 1057663 - 1057609
Alignment:
Q  210 tacctatgagctagattgaatttgcccatcttgtaaggtgtaagaagaggaattg 264  Q
    |||||||||| |||||||||||| ||||| |||||||| || ||||| |||||||    
T  1057663 tacctatgagatagattgaattttcccattttgtaaggagtgagaagtggaattg 1057609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 1057794 - 1057762
Alignment:
Q  95 ttcttgttagtggtgccaaaacaactctgaaat 127  Q
    ||||||| |||||||||||||||||||||||||    
T  1057794 ttcttgtgagtggtgccaaaacaactctgaaat 1057762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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