View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_15 (Length: 459)
Name: NF12841_low_15
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 441
Target Start/End: Original strand, 8192323 - 8192752
Alignment:
| Q |
12 |
cagagattaacttaatccattatctgatcttcagaatttttaaactaagagaacaatttccagccttttctcttctattccttaatcttcggaatatttt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8192323 |
cagagattaacttaatccattatctgatcttcagaatttttaaactaagagaacaatttccagccttttctcttctattccttaatcttcggaatatttt |
8192422 |
T |
|
| Q |
112 |
aacttcttaagttgataatttatacaaaaatctaacaccttaacaaatcaaaagnnnnnnngatttcaagattaaattttctggttgtttctcggtctca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8192423 |
aacttcttaagttgataatttatacaaaaatctaacaccttaacaaatcaaaagaaaaaaagatttcaagattaaattttctggttgtttctcggtctca |
8192522 |
T |
|
| Q |
212 |
ttgtcacaaaggtaaatcaatcttttcacacaagctacctatggcctcgtaccaaatatattaacaaaatatcaaggttcaaaacaatccagttatattt |
311 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8192523 |
ttgtcacaaaggtaaatcaatcttttcacacatgctacctatggcctcgtaccaaatatattaacgaaatatcaaggttcaaaacaatccagttatattt |
8192622 |
T |
|
| Q |
312 |
ctgttttgattttatattaggtgatcacaatcaggatatcaaagcatataagatatataatgcattaactattaactatacaacataaaatgaaaagact |
411 |
Q |
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| T |
8192623 |
ctgttttgattttatatttggtgatcacaatcaggatatcaaagcatataaaatatataatgcattaactattaactatacaacataaaatgaaaagact |
8192722 |
T |
|
| Q |
412 |
tgccaattatacctgacagaacgccgtaaa |
441 |
Q |
| |
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| T |
8192723 |
tgccaattatacctgacagaacgccgtaaa |
8192752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 12 - 441
Target Start/End: Original strand, 42350152 - 42350569
Alignment:
| Q |
12 |
cagagattaacttaatccattatctgatcttcagaatttttaaactaagagaacaatttccagccttttctcttctattccttaatcttcggaatatttt |
111 |
Q |
| |
|
|||||||||||||||| |||| ||| ||| ||| |||||||||||| ||| ||| ||||||| ||||||| |||||||| |||||||| ||||||||| |
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| T |
42350152 |
cagagattaacttaattcattttctaatcatcatcatttttaaactatgagtgcaagttccagctttttctcatctattccctaatcttcagaatatttt |
42350251 |
T |
|
| Q |
112 |
aacttcttaagttgataatttatacaaaaatctaacaccttaacaaatcaaaagnnnnnnngatttcaagattaaattttctggttgtttctcggtctca |
211 |
Q |
| |
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||||||||||||||||||| || ||||||| ||||||||||| ||| | ||| |||||||||| |||| |||||| ||||| | |||| |
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| T |
42350252 |
aacttcttaagttgataatcta--caaaaatttaacaccttaataaaactaaa--acataagatttcaagagtaaacattctggccttttctagaactca |
42350347 |
T |
|
| Q |
212 |
ttgtcacaaaggtaaatcaatcttttcacacaagctacctatggcctcgtaccaaatatattaacaaaatatcaaggttcaaaacaatccagttatattt |
311 |
Q |
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| T |
42350348 |
tcgtcacaaaggaaaatcaatcttctcacaaaagctagatagggc-tcataccaaatatattaacgaaatatcagggttcaaaacaatctagttatattt |
42350446 |
T |
|
| Q |
312 |
ctgttttgattttatattaggtgatcacaatcaggatatcaaagcatataagatatataatgcattaactattaactatacaacataaaatgaaaagact |
411 |
Q |
| |
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||| || |||||||||| ||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42350447 |
atgtcttcattttatatttggtgatcacaatcagaatatcaaagcttagaagatatataatgc-------attaactatacaacataaaatgaaaagact |
42350539 |
T |
|
| Q |
412 |
tgccaattatacctgacagaacgccgtaaa |
441 |
Q |
| |
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|||| ||| | ||||||||||||||||||| |
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|
| T |
42350540 |
tgcccattttccctgacagaacgccgtaaa |
42350569 |
T |
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