View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_16 (Length: 438)
Name: NF12841_low_16
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 172 - 426
Target Start/End: Complemental strand, 36544956 - 36544701
Alignment:
| Q |
172 |
ttatcagaacaaatagttcatgtgttttcttctaaaagaacctact-ttttggccttaccacattagcgat---gtaacaaaaataaaataaaatgcagt |
267 |
Q |
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| T |
36544956 |
ttatcggaacaaatagttcatgtgttt-cttctaaaagaacctactcttttggccttaccacattagcgatattgtaacaaaaagaaaa--aaatgcagt |
36544860 |
T |
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| Q |
268 |
gtaaccaaaagacattagcgatatgaaatttgaaatgtcggaacaaataaaaaatattaaaaccagaatttatgacaaatagcctatgtctacctctaat |
367 |
Q |
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| T |
36544859 |
gtaaccaaaagacattagcgatatgaaatttgaaatgtcggaacaaataaaaaatattaaaaccagaatttatgacaaatagcctatgtctacctctaat |
36544760 |
T |
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| Q |
368 |
tgcaattcaattggtgattcgcatctactgtattaataattttaattgactttcatctc |
426 |
Q |
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| T |
36544759 |
tgcaattcaattggtgattcgcatctactgtattaataattttaattgactttgatctc |
36544701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 36545024 - 36544952
Alignment:
| Q |
74 |
gtactaaatattcaatgttgtatttgtcaataaataacctttactgcttaatacctttatttggccctttatc |
146 |
Q |
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| T |
36545024 |
gtactaaatattcaatgttgtatttgtcaataaataacctttactgcttaatacctttatttggccctttatc |
36544952 |
T |
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