View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_28 (Length: 378)
Name: NF12841_low_28
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 9909520 - 9909876
Alignment:
| Q |
15 |
cagatacattagttattcaatgaatctgaaaaacggggttttgttataataatgacctggcccaattttggggttgctaaacaaatgtatacttttaata |
114 |
Q |
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| T |
9909520 |
cagatacattagatattcaatgaatctgaaaagcagg-ttttgttataataatgacccggcccgaatatgggtttgctaaacaaatgtatacttttaata |
9909618 |
T |
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| Q |
115 |
cagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaattagtgactt |
214 |
Q |
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| T |
9909619 |
cagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaattagtgactt |
9909718 |
T |
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| Q |
215 |
ggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatggagggattgttgcagttctaagtatcaaagacaacatagt |
314 |
Q |
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| T |
9909719 |
ggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatggagggattgttgcagttctaagtatcaaagacaacatagt |
9909818 |
T |
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| Q |
315 |
tttatctatggtgaagaggatgatcatgatattagcaaccaccatcctttcttctcac |
372 |
Q |
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| T |
9909819 |
tttatctatggtgaagaggatgatcatgatattagtaaccaccatcctttcttctcac |
9909876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 276
Target Start/End: Complemental strand, 27091391 - 27091222
Alignment:
| Q |
107 |
ttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaatt |
206 |
Q |
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| T |
27091391 |
ttttaatacagggcaaacgaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
27091292 |
T |
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| Q |
207 |
agtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatgga |
276 |
Q |
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| T |
27091291 |
aatcacttggaaccattaaagattgctgcaatgatagataatgagatatcaactttatttccaacttgga |
27091222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 276
Target Start/End: Original strand, 27186910 - 27187079
Alignment:
| Q |
107 |
ttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaatt |
206 |
Q |
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| T |
27186910 |
ttttaatacagggcaaacgaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
27187009 |
T |
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| Q |
207 |
agtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatgga |
276 |
Q |
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| T |
27187010 |
aatcacttggaaccattaaagattgctgcaatgatagataatgagatatcaactttatttccaacttgga |
27187079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 27045923 - 27045956
Alignment:
| Q |
14 |
tcagatacattagttattcaatgaatctgaaaaa |
47 |
Q |
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| T |
27045923 |
tcagatacataagttattcaatgaatctgaaaaa |
27045956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 37514242 - 37514270
Alignment:
| Q |
18 |
atacattagttattcaatgaatctgaaaa |
46 |
Q |
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| T |
37514242 |
atacattagttattcaatgaatctgaaaa |
37514270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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