View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12841_low_29 (Length: 376)

Name: NF12841_low_29
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12841_low_29
NF12841_low_29
[»] chr4 (23 HSPs)
chr4 (11-271)||(12124813-12125073)
chr4 (13-170)||(12126871-12127028)
chr4 (16-154)||(2367603-2367741)
chr4 (268-354)||(12125127-12125213)
chr4 (16-154)||(2373167-2373305)
chr4 (194-246)||(12127052-12127104)
chr4 (25-70)||(1547467-1547512)
chr4 (194-266)||(2373055-2373127)
chr4 (205-263)||(2367494-2367552)
chr4 (25-79)||(2460600-2460654)
chr4 (86-152)||(2477695-2477761)
chr4 (32-77)||(2547542-2547587)
chr4 (109-158)||(2547613-2547662)
chr4 (105-154)||(5101954-5102003)
chr4 (203-260)||(12113818-12113875)
chr4 (13-84)||(2621158-2621229)
chr4 (25-79)||(2376235-2376289)
chr4 (105-151)||(2460674-2460720)
chr4 (25-79)||(2486310-2486364)
chr4 (105-154)||(2467679-2467728)
chr4 (14-79)||(2472084-2472149)
chr4 (105-154)||(2525945-2525994)
chr4 (110-154)||(5106226-5106270)
[»] chr1 (1 HSPs)
chr1 (24-77)||(15837967-15838020)
[»] chr8 (3 HSPs)
chr8 (268-352)||(4416246-4416329)
chr8 (24-79)||(39516859-39516914)
chr8 (25-77)||(32152209-32152261)
[»] chr5 (2 HSPs)
chr5 (25-77)||(32268773-32268825)
chr5 (15-68)||(39252916-39252969)
[»] chr6 (1 HSPs)
chr6 (32-68)||(6437159-6437195)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 12124813 - 12125073
Alignment:
Q  11 cagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagaggttccatgtagcagttggtgtcgcggtcgtt 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  12124813 cagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttggagacaatggagagaggttccaagtagcagttggtgtcaccgtcgtt 12124912  T
Q  111 gaggaatttgaagatgatctcccatatctcatctggtaaatatggacaagctactgccagnnnnnnnnnnnnnnnnnnnnnnactgcattggatttggaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                       |||||||||||||||||    
T  12124913 gaggaatttgaagatgatctcccatatctcatctggtaaatatggacaagctgctgccagttttcgttctttagggtttttttctgcattggatttggaa 12125012  T
Q  211 tatgcggctgcctccattacaagctattcaagcaaactacaacaccagtacaaaaatgata 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12125013 tatgcggctgcctccattacaagctattcaagcaaactacaacaccagtacaaaaatgata 12125073  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 12126871 - 12127028
Alignment:
Q  13 gagattgcgatggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagaggttccatgtagcagttggtgtcgcggtcgttga 112  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||| ||| ||||||||    
T  12126871 gagactgcgatggagaataggagacggttggtgatggagagaaattgtttggagacaatggagagaggttttaaatagcagttggtgacgccgtcgttga 12126970  T
Q  113 ggaatttgaagatgatctcccatatctcatctggtaaatatggacaagctactgccag 170  Q
    |||||||||||||||||||||||| |||||| |||||||||||||| ||| |||||||    
T  12126971 ggaatttgaagatgatctcccataactcatcaggtaaatatggacatgctgctgccag 12127028  T

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Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 2367741 - 2367603
Alignment:
Q  16 attgcgatggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagaggttccatgtagcagttggtgtcgcggtcgttgagga 115  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||| |||||| ||||||||| |    
T  2367741 attgctatggagaatcggagacggttggtgatggagagaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtcgctgtcgttgagaa 2367642  T
Q  116 atttgaagatgatctcccatatctcatctggtaaatatg 154  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  2367641 atttgaagatgatctcccataactcatctgttaaatatg 2367603  T

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Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 12125127 - 12125213
Alignment:
Q  268 gatacaatacaacataggtttttgagagcctgtctctgcacagttcagattcttcctaattccacccatttttctattctggttttc 354  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  12125127 gatacaatacaacataggttttcgagagcctgtctctgcacagttccgactcttcctaattccacccatttttctattctggttttc 12125213  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 2373305 - 2373167
Alignment:
Q  16 attgcgatggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagaggttccatgtagcagttggtgtcgcggtcgttgagga 115  Q
    ||||| ||||||||| ||||| | |||||||||||||||||||||||||| |||| |||||||||||| | ||||| | || ||| || ||||||||| |    
T  2373305 attgctatggagaatcggagatgattggtgatggagagaaattgtttggaaacaacggagagaggttcgaagtagcggctgttgttgccgtcgttgagaa 2373206  T
Q  116 atttgaagatgatctcccatatctcatctggtaaatatg 154  Q
    |||||||||||||||||||||  ||||||| ||||||||    
T  2373205 atttgaagatgatctcccataattcatctgttaaatatg 2373167  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 12127052 - 12127104
Alignment:
Q  194 ctgcattggatttggaatatgcggctgcctccattacaagctattcaagcaaa 246  Q
    |||||||||| |||||||||||||||||||||||||| ||| |||||||||||    
T  12127052 ctgcattggaattggaatatgcggctgcctccattacgagcaattcaagcaaa 12127104  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 1547512 - 1547467
Alignment:
Q  25 gagaattggagacggttggtgatggagagaaattgtttggagacaa 70  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  1547512 gagaatcggagacggttggtgatggagaggaattgtttggagacaa 1547467  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 2373127 - 2373055
Alignment:
Q  194 ctgcattggatttggaatatgcggctgcctccattacaagctattcaagcaaactacaacaccagtacaaaaa 266  Q
    |||||||  |||||||| ||| ||||||||||||||| ||| | ||||||||||| ||||||||| |||||||    
T  2373127 ctgcattacatttggaagatgtggctgcctccattacgagcaactcaagcaaactgcaacaccagaacaaaaa 2373055  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 2367552 - 2367494
Alignment:
Q  205 ttggaatatgcggctgcctccattacaagctattcaagcaaactacaacaccagtacaa 263  Q
    |||||| |||||||| |||||||||| ||| | ||||||||||| ||||||||||||||    
T  2367552 ttggaagatgcggcttcctccattacgagcgactcaagcaaactgcaacaccagtacaa 2367494  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 2460600 - 2460654
Alignment:
Q  25 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 79  Q
    |||||| ||||||| |||||||||||||| || ||||||||||| ||||||||||    
T  2460600 gagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagag 2460654  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 2477695 - 2477761
Alignment:
Q  86 tgtagcagttggtgtcgcggtcgttgaggaatttgaagatgatctcccatatctcatctggtaaata 152  Q
    ||||| ||||| |||||| ||||||||||||||||||||||  |||||| | ||| |||||||||||    
T  2477695 tgtagaagttgttgtcgccgtcgttgaggaatttgaagatgccctcccacaactcctctggtaaata 2477761  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 2547542 - 2547587
Alignment:
Q  32 ggagacggttggtgatggagagaaattgtttggagacaatggagag 77  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  2547542 ggagacggttggtgatggacagaaactgtttggagacgatggagag 2547587  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 2547613 - 2547662
Alignment:
Q  109 ttgaggaatttgaagatgatctcccatatctcatctggtaaatatggaca 158  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| |||||    
T  2547613 ttgaggaatttgaagatgtgctcccataactcatctggtaaatagggaca 2547662  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 5102003 - 5101954
Alignment:
Q  105 gtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatg 154  Q
    ||||||||||||||||||||||  |||||||| |||||| ||||||||||    
T  5102003 gtcgttgaggaatttgaagatgcgctcccataactcatccggtaaatatg 5101954  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 12113818 - 12113875
Alignment:
Q  203 atttggaatatgcggctgcctccattacaagctattcaagcaaactacaacaccagta 260  Q
    |||||| ||| | ||||||||||||||| ||| ||||||||||||| |||||||||||    
T  12113818 atttgggataagtggctgcctccattacgagcaattcaagcaaactgcaacaccagta 12113875  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 2621229 - 2621158
Alignment:
Q  13 gagattgcgatggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagaggttcc 84  Q
    ||||||| |||||||||  | ||||||||||||||||| | ||| |||||||| || | |||||||||||||    
T  2621229 gagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggatacgagggagagaggttcc 2621158  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 2376289 - 2376235
Alignment:
Q  25 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 79  Q
    |||||| ||| |||||||||||||||||||||   ||||||||| ||||||||||    
T  2376289 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagag 2376235  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 2460674 - 2460720
Alignment:
Q  105 gtcgttgaggaatttgaagatgatctcccatatctcatctggtaaat 151  Q
    ||||| |||||||||||||||| |||||||||| || ||||||||||    
T  2460674 gtcgtcgaggaatttgaagatgctctcccatatttcctctggtaaat 2460720  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 2486310 - 2486364
Alignment:
Q  25 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 79  Q
    |||||| ||||||||||||||||||| ||||| ||||| ||||| | ||||||||    
T  2486310 gagaatcggagacggttggtgatggacagaaactgttttgagacgagggagagag 2486364  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 2467679 - 2467728
Alignment:
Q  105 gtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatg 154  Q
    ||||||||||||||||||||||  |||||||| ||| | |||||||||||    
T  2467679 gtcgttgaggaatttgaagatgcgctcccataactcctttggtaaatatg 2467728  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 2472084 - 2472149
Alignment:
Q  14 agattgcgatggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 79  Q
    |||||| || |||||||  |||||| ||||||||||||| ||| ||||||||||| ||||| ||||    
T  2472084 agattgtgagggagaatcagagacgattggtgatggagaaaaactgtttggagaccatggaaagag 2472149  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 2525945 - 2525994
Alignment:
Q  105 gtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatg 154  Q
    ||||||||||||||||||||||   ||||||| ||| |||||||||||||    
T  2525945 gtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatatg 2525994  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 5106270 - 5106226
Alignment:
Q  110 tgaggaatttgaagatgatctcccatatctcatctggtaaatatg 154  Q
    |||||||||||||||||  |||||||| |||||| ||||||||||    
T  5106270 tgaggaatttgaagatgccctcccataactcatccggtaaatatg 5106226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 15838020 - 15837967
Alignment:
Q  24 ggagaattggagacggttggtgatggagagaaattgtttggagacaatggagag 77  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| || |||||    
T  15838020 ggagaatcggagacggttggtgatggagagaaactgtttggagaccatcgagag 15837967  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 4416246 - 4416329
Alignment:
Q  268 gatacaatacaacataggtttttgagagcctgtctctgcacagttcagattcttcctaattccacccatttttctattctggttt 352  Q
    |||| |||||| || ||||||| ||||| |||||||| |||| |||||||||||||||||||||  | |||||||||| ||||||    
T  4416246 gatataatacaccacaggttttcgagagactgtctctccacaattcagattcttcctaattccaaac-tttttctattttggttt 4416329  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 39516859 - 39516914
Alignment:
Q  24 ggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 79  Q
    |||||||  ||||||||||||||||| |||||||||| ||||||| ||||||||||    
T  39516859 ggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagag 39516914  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 32152209 - 32152261
Alignment:
Q  25 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagag 77  Q
    |||||| |||||| ||||||||||||||| || ||||||||||| | ||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacgagggagag 32152261  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 32268773 - 32268825
Alignment:
Q  25 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagag 77  Q
    |||||| | |||||||||||||||||||| || ||||||||||| ||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 39252969 - 39252916
Alignment:
Q  15 gattgcgatggagaattggagacggttggtgatggagagaaattgtttggagac 68  Q
    |||||||| |||| || ||||||||||| ||||||||||||| ||| |||||||    
T  39252969 gattgcgagggaggatcggagacggttgctgatggagagaaactgtatggagac 39252916  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 6437159 - 6437195
Alignment:
Q  32 ggagacggttggtgatggagagaaattgtttggagac 68  Q
    |||||||||||||||||||||| || |||||||||||    
T  6437159 ggagacggttggtgatggagaggaactgtttggagac 6437195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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