View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_30 (Length: 376)
Name: NF12841_low_30
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 7565375 - 7565021
Alignment:
| Q |
1 |
attaagttccctttaaagactcgtgagattcatgctcaggtgattgactcttgcgatggcatcatctttttcagagtggaatgcgattaccaacatcgta |
100 |
Q |
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| T |
7565375 |
attaagttccctttaaacactcgtgacattcatgctcacgtgattgactcttgcgatggcatcatctttttcagagtgcaatacaattacaaacattgta |
7565276 |
T |
|
| Q |
101 |
gtatggtagcatggaacctttgtaccagaaaattgaagacattgccacctttgaatctacctggccgtacattaaaaactttatatagtgtcgggtatga |
200 |
Q |
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| T |
7565275 |
atatggtagcatggaacccttgtaccagaaaattgaagacattgccacctttgaacctacctggccatacattaaacactctatatagtgtcgggtatga |
7565176 |
T |
|
| Q |
201 |
tagtttcaccgataattacaaagtaattgtggttgcatgctatcaatattataactcctataaattttgcaaaactcaagttaaggttcatactttaggt |
300 |
Q |
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| T |
7565175 |
tagtttcaccgataattacaaagtaattgtggttgcatgctatcaacattataactcctataaattttgcaaaactcaagttaaggttcatactttag-- |
7565078 |
T |
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| Q |
301 |
agtagcaatgtttggagaaggattacagacttcccttctgaaaacaagggtgtacctg |
358 |
Q |
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| T |
7565077 |
-gtagcaatgtttggagaaggattccagacttcccttctgaaaacaagggtgtacctg |
7565021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 1471281 - 1471212
Alignment:
| Q |
267 |
ttgcaaaactcaagttaaggttcatactttaggtagtagcaatgtttggagaaggattacagacttcccttct |
339 |
Q |
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| T |
1471281 |
ttgcaaaactctagttaaggttcatactttag---gtaacaatttttggagaacgattcaagacttcccttct |
1471212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 1442458 - 1442387
Alignment:
| Q |
269 |
gcaaaactcaagttaaggttcatactttaggtagtagcaatgtttggagaaggattacagacttcccttctgaaa |
343 |
Q |
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| T |
1442458 |
gcaaaactgaagttagggttcatactttaggtact---aatttttggaaaaggatcccagacttcccttctgaaa |
1442387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 1442681 - 1442652
Alignment:
| Q |
43 |
attgactcttgcgatggcatcatctttttc |
72 |
Q |
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| T |
1442681 |
attgactcttgcgatggcatcatctttttc |
1442652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 55419475 - 55419548
Alignment:
| Q |
267 |
ttgcaaaactcaagttaaggttcatactttaggtagtagcaatgtttggagaaggattacagacttcccttctgaaa |
343 |
Q |
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||||||||||||||||| || |||||||||||||| ||| |||||| |||||| |||||||||||||||||| |
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| T |
55419475 |
ttgcaaaactcaagttagggctcatactttaggtac---caacttttggaaaaggataccagacttcccttctgaaa |
55419548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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