View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12841_low_31 (Length: 351)

Name: NF12841_low_31
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12841_low_31
NF12841_low_31
[»] chr6 (3 HSPs)
chr6 (16-339)||(34374196-34374517)
chr6 (127-229)||(11191585-11191687)
chr6 (149-210)||(10084610-10084671)
[»] chr4 (1 HSPs)
chr4 (131-338)||(10494392-10494599)
[»] chr8 (2 HSPs)
chr8 (114-322)||(2688632-2688833)
chr8 (10-126)||(40159256-40159367)
[»] chr7 (2 HSPs)
chr7 (124-338)||(11228124-11228337)
chr7 (263-327)||(1217631-1217695)
[»] chr2 (2 HSPs)
chr2 (128-338)||(32162376-32162589)
chr2 (269-338)||(280423-280492)
[»] scaffold0024 (2 HSPs)
scaffold0024 (243-336)||(145312-145405)
scaffold0024 (243-338)||(144317-144412)
[»] chr1 (3 HSPs)
chr1 (246-338)||(40805442-40805534)
chr1 (247-338)||(31915122-31915213)
chr1 (249-338)||(13442049-13442141)
[»] chr3 (3 HSPs)
chr3 (166-288)||(3064194-3064316)
chr3 (233-338)||(8536793-8536898)
chr3 (269-338)||(43304345-43304414)
[»] chr5 (2 HSPs)
chr5 (233-338)||(18251990-18252095)
chr5 (124-208)||(18251855-18251939)
[»] scaffold0054 (1 HSPs)
scaffold0054 (301-334)||(48954-48987)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 34374517 - 34374196
Alignment:
Q  16 caatcttcaccaagtaacatggcatgcttcggcagaaaacgtcaacatttgttaatggttctctagaccttcctcagatgccaaactttgctagaacacc 115  Q
    |||||||||||||||||||||     ||| |||| ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34374517 caatcttcaccaagtaacatg-----ctttggcacaaaacatcatcatttgttaatggttctctaggccttcctcagatgccaaactttgctagaacacc 34374423  T
Q  116 gcctcatatgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||    
T  34374422 gcctcatatgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaaccatctgattatattactttacaaaaatttacaccactcagtgaa 34374323  T
Q  216 ttgtcatttagtactatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgct 315  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |    
T  34374322 ttgtcatttagtactatgattaaagtcgaggttaaaatgatggatctataatgtatccagcatgctactacattttctcaatggtataaaggcaactgat 34374223  T
Q  316 ---atatttttcaaatcaaaccatctc 339  Q
        |||||||||||||||||||||||    
T  34374222 gtattatttttcaaatcaaaccatctc 34374196  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 11191585 - 11191687
Alignment:
Q  127 cgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttag 226  Q
    ||||||||||||||||||||  ||||| || || ||||||||||  |||||||||||||| ||||||||||||  ||||||||| ||| | ||||| |||    
T  11191585 cgaagaaaccaccggatcgatatgttgttatagttatcgaccaacaatctgattatgttattttacaaaaattgtcaccactcatggattggtcatctag 11191684  T
Q  227 tac 229  Q
    |||    
T  11191685 tac 11191687  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 10084610 - 10084671
Alignment:
Q  149 tgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactca 210  Q
    ||||| ||||| |||||||||| ||| ||||||||||| ||||||||||||  |||||||||    
T  10084610 tgttgttacaggtatcgaccaaccatttgattatgttattttacaaaaattgtcaccactca 10084671  T

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Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 131 - 338
Target Start/End: Original strand, 10494392 - 10494599
Alignment:
Q  131 gaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttagtact 230  Q
    |||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |||||||||| ||| | ||||| ||||||     
T  10494392 gaaaccactggatcgacgtgttgctataggtatcgaccaaccatctgattatgttactttacaaaaattcacaccactcacggattggtcatctagtacc 10494491  T
Q  231 atgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatca 330  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||  | ||||| |||| |||||||||||||||||| ||| ||    
T  10494492 atgattaaagtcgaggctaaaatgatggatctagaaagtactcagcatgcttctacatttcttcaatgggataagggcaactgctatattttttaaacca 10494591  T
Q  331 aaccatct 338  Q
    ||| ||||    
T  10494592 aactatct 10494599  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 114 - 322
Target Start/End: Original strand, 2688632 - 2688833
Alignment:
Q  114 ccgcctcatatgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcaggg 213  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||       ||||||||  |    
T  2688632 ccgccgcagatgccgaagaaaccactggatcgacgtgttgctacagatatcgaccaaccatacgattatgttactttacaaa-------accactcacag 2688724  T
Q  214 aattgtcatttagtactatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactg 313  Q
    | | ||||| ||| || | ||||| |||||||||||||||||||||||||||| ||||||| ||||| |||| || |  | ||||| ||||||||||||     
T  2688725 attggtcatctagaaccacgattatagtcgaggctaaaatgatggatctagaaagtattcaacatgcaactatatctcttcaatgggataaaggcaacta 2688824  T
Q  314 ctatatttt 322  Q
    |||||||||    
T  2688825 ctatatttt 2688833  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 40159367 - 40159256
Alignment:
Q  10 catcatcaatcttcaccaagtaacatggcatgcttcggcagaaaacgtcaacatttgttaatggttctctagaccttcctcagatgccaaactttgctag 109  Q
    ||||| |||||||||||||||||||||     ||| ||||||||||| || | |||||||||||||||| || ||||||||||||| ||| |||||||||    
T  40159367 catcagcaatcttcaccaagtaacatg-----ctttggcagaaaacgccatcgtttgttaatggttctccaggccttcctcagatgtcaagctttgctag 40159273  T
Q  110 aacaccgcctcatatgc 126  Q
    |||||||||||||||||    
T  40159272 aacaccgcctcatatgc 40159256  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 124 - 338
Target Start/End: Original strand, 11228124 - 11228337
Alignment:
Q  124 tgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatt 223  Q
    |||||||||||||||  ||| || |||||||||||  |||||||| | | ||||||||  |||||||||||||||| |||||||||| |||  ||||||     
T  11228124 tgccgaagaaaccactagattgatgtgttgctacaagtatcgacccaccctctgattacattactttacaaaaattcacaccactcaaggatgtgtcatc 11228223  T
Q  224 tagtactatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatattttt 323  Q
    |||||    |||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||  | ||||| |||||||||||| ||| | ||||    
T  11228224 tagtatccggattaaagtcaaggctaaaatgatggatctagaaagtatttagcatggtactacatttattcaatggcataaaggcaacttctaca-tttt 11228322  T
Q  324 caaatcaaaccatct 338  Q
    |||| ||||||||||    
T  11228323 caaaacaaaccatct 11228337  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 1217695 - 1217631
Alignment:
Q  263 agaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaa 327  Q
    |||| |||||| ||||| |||||||||| || ||||| |||||||||||||||||||||||||||    
T  1217695 agaaagtattcggcatgatactacatttcctcaatgggataaaggcaactgctatatttttcaaa 1217631  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 128 - 338
Target Start/End: Complemental strand, 32162589 - 32162376
Alignment:
Q  128 gaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttagt 227  Q
    ||||||||||  |||||||||||||| || || |||| ||||| ||||||||||||||| |||||| |||||  ||| ||||| ||| | ||||| ||||    
T  32162589 gaagaaaccattggatcgacgtgttgttataggtatcaaccaaccatctgattatgttaatttacagaaattcccactactcatggattggtcatctagt 32162490  T
Q  228 actatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttctt----aatggtataaaggcaactgctatattttt 323  Q
    |||| |||||||||| ||| ||||||||| | |||| ||  |||||||||||||||||||||| |||    ||||| |||||||||||| |||||||||     
T  32162489 actacgattaaagtctaggttaaaatgattggtctataagttattcagcatgctactacattt-cttcaaaaatggcataaaggcaactactatattttc 32162391  T
Q  324 caaatcaaaccatct 338  Q
    |||| ||||||||||    
T  32162390 caaagcaaaccatct 32162376  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 280492 - 280423
Alignment:
Q  269 tattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 338  Q
    ||||||||||||||||||||||  | ||||| ||||| |||||||||||||||| |||||||||||||||    
T  280492 tattcagcatgctactacatttcttcaatggcataaaagcaactgctatattttccaaatcaaaccatct 280423  T

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Target: scaffold0024 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 336
Target Start/End: Original strand, 145312 - 145405
Alignment:
Q  243 gaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccat 336  Q
    |||||||||||||||||| ||||  |||||| |||||||| |||||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  145312 gaggctaaaatgatggatttagagcgtattcggcatgctattacatttctttaatgggataaaggcaactgctatatttttcaaatcaaaccat 145405  T

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Target: scaffold0024; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 338
Target Start/End: Complemental strand, 144412 - 144317
Alignment:
Q  243 gaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 338  Q
    |||||||||||||||||| ||||  |||||| ||||||||||||||||  | ||||| |||||||||||| |||||||||||||||||||||||||    
T  144412 gaggctaaaatgatggatttagagcgtattcggcatgctactacatttcttcaatgggataaaggcaactactatatttttcaaatcaaaccatct 144317  T

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Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 40805442 - 40805534
Alignment:
Q  246 gctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 338  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  | ||||| |||||| ||||||||||||| | ||||||||| |||||    
T  40805442 gctaaaatgatggatttagaatgtattcagcatgctactacatttcttcaatgggataaagacaactgctatattctccaaatcaaatcatct 40805534  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 31915122 - 31915213
Alignment:
Q  247 ctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 338  Q
    ||||||||||||||||||||  |||||||||||||||| |||||  | ||||| |||||||||||  | ||||||| |||| ||||||||||    
T  31915122 ctaaaatgatggatctagaaaatattcagcatgctactgcatttcttcaatgggataaaggcaacatcaatattttacaaaccaaaccatct 31915213  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 13442141 - 13442049
Alignment:
Q  249 aaaatgatggatctagaatgtattcagcatgct---actacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 338  Q
    |||||||||||||||||| ||||||  ||||||   |||||||||  | ||||||||||||| ||||| | ||||||||||| ||||| ||||    
T  13442141 aaaatgatggatctagaaagtattcgacatgctgctactacatttcttcaatggtataaaggaaactgttttatttttcaaaccaaactatct 13442049  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 288
Target Start/End: Complemental strand, 3064316 - 3064194
Alignment:
Q  166 accaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttagtactatgattaaagtcgaggctaaaatgatggatctaga 265  Q
    ||||| ||| ||||||||||||||||||||||||| ||| ||||| ||| | ||||  |||||| | ||||||| |||| ||||||||||||||||||||    
T  3064316 accaaccatttgattatgttactttacaaaaatttccacaactcaaggattggtcacctagtaccacgattaaattcgaagctaaaatgatggatctaga 3064217  T
Q  266 atgtattcagcatgctactacat 288  Q
    | |||||  | ||||||||||||    
T  3064216 aagtatttggtatgctactacat 3064194  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 338
Target Start/End: Complemental strand, 8536898 - 8536793
Alignment:
Q  233 gattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaa 332  Q
    ||||||| | |||||||||||||||||| ||||  |||||||||||| ||||| ||||  | ||||| |||||||||||||||||| |||| |||  |||    
T  8536898 gattaaatttgaggctaaaatgatggatttagagagtattcagcatgttactatatttcttcaatggcataaaggcaactgctatagtttttaaacgaaa 8536799  T
Q  333 ccatct 338  Q
    ||||||    
T  8536798 ccatct 8536793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 43304414 - 43304345
Alignment:
Q  269 tattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 338  Q
    ||||||||||||||||||||||  | || || |||||| |||||| ||||||||||||| ||||| ||||    
T  43304414 tattcagcatgctactacatttcttcaacggaataaagtcaactgttatatttttcaaaccaaacaatct 43304345  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 18251990 - 18252095
Alignment:
Q  233 gattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaa 332  Q
    |||||||||||||||||||||||||||||| ||  ||||||   ||||||||||||||  | ||| | ||||||  ||||||||||||||||||| ||||    
T  18251990 gattaaagtcgaggctaaaatgatggatctggatagtattcgaaatgctactacatttattcaataggataaagaaaactgctatatttttcaaaccaaa 18252089  T
Q  333 ccatct 338  Q
    ||||||    
T  18252090 ccatct 18252095  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 18251855 - 18251939
Alignment:
Q  124 tgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccact 208  Q
    |||| |||||||||| ||||||| ||| |||||||| |||| ||||| ||||||||||| ||||||||||||||||  |||||||    
T  18251855 tgccaaagaaaccactggatcgatgtgatgctacaggtatcaaccaaccatctgattatattactttacaaaaattcccaccact 18251939  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 48954 - 48987
Alignment:
Q  301 ataaaggcaactgctatatttttcaaatcaaacc 334  Q
    ||||||||||||||||||||||||||| ||||||    
T  48954 ataaaggcaactgctatatttttcaaaccaaacc 48987  T

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