View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_36 (Length: 344)
Name: NF12841_low_36
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 23939253 - 23938934
Alignment:
| Q |
1 |
gaaactgggaaaactatgtattcaactaagtacaaaaagatagtacgttgaatgcttgatgtatatctacttgctactagacctgatctaacctattatg |
100 |
Q |
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| T |
23939253 |
gaaaccgggaaaactatggatgcgactaagtacaaatagat----ggttgaatgcttgatg--tacctacttgctactagacttgatctcacttattatg |
23939160 |
T |
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| Q |
101 |
tatgtcttgtggctagatatatggaaagacctacaaaaatgcaatcggcagcaactaagagacgcttgagatatcttaaaggaacaatgaactttgggat |
200 |
Q |
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| T |
23939159 |
tatgtcttgaggctagatatatggaaagacctacaaaaattcacttggcatcaactaagagaatcttgagatatcttaaaggaacaatgaactttgggat |
23939060 |
T |
|
| Q |
201 |
tatgtagaagagcgattattttatcagcttaacaggatggtcaaactttgattatgttggagatacatatgatagaaagagtatatcaagttttgtgctt |
300 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||| |||||||||| |||||||| |||| || |
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| T |
23939059 |
tatgtagaaaagcgattattttatcagcttaacatgatggtcaaactttgattatgctggagatatagatgacagaaagagtacatcaagttatgtgttt |
23938960 |
T |
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| Q |
301 |
atgataggcaatggagcaatatcatg |
326 |
Q |
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| T |
23938959 |
attataggcaatggagcaatatcatg |
23938934 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 42971429 - 42971499
Alignment:
| Q |
70 |
cttgctactagacctgatctaacctattatgtatgtcttgtggctagatatatggaaagacctacaaaaat |
140 |
Q |
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| T |
42971429 |
cttgctacaagacctgatctagcctattcagtttgtctgatagctagatatatggaaagaccaacagaaat |
42971499 |
T |
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