View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_38 (Length: 336)
Name: NF12841_low_38
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 99 - 312
Target Start/End: Original strand, 24819242 - 24819475
Alignment:
| Q |
99 |
tttgaaagcattcaattcttctaagtggtaactggtaatccaccaa-cattccactttgtaattccaatttcctatgtgctgataccaacgtgtattttg |
197 |
Q |
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| T |
24819242 |
tttgaaagcattcaattcttctaagtggtaactggtaatccaccaaacattccactttgtaattccaatttcctatgtgctgataccaacgtgtattttg |
24819341 |
T |
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| Q |
198 |
actg---------------tcagtttccaatgttaa----------caagaatttatagagcttgctaatgctattcttttcctctctattcaattttaa |
272 |
Q |
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| T |
24819342 |
actgtcaggcttaattttatcagtttccaatgttaactcatgttaccaagaatttatagagct------tgctattcttttcctctctattcaattttaa |
24819435 |
T |
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| Q |
273 |
ttcaacgctccatagtaatatgttcagtctccacattatt |
312 |
Q |
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| T |
24819436 |
ttcaacgctccatcgtaatatgttcagtctccacattatt |
24819475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 24819102 - 24819182
Alignment:
| Q |
17 |
cactcatcagtgcccccatttaatttaccattaaaagatgatcatcggtcaatccttgcattcatatatcataacttatcta |
98 |
Q |
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| T |
24819102 |
cactcatcagtgcccccatttaatttaccattaaaagatgatcatcggtcaatccttgcattcatatatcat-acttatcta |
24819182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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