View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12841_low_42 (Length: 288)

Name: NF12841_low_42
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12841_low_42
NF12841_low_42
[»] chr4 (1 HSPs)
chr4 (1-288)||(30184649-30184936)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 30184649 - 30184936
Alignment:
Q  1 tgctaatacaatcctcttacgccttgctgatgcatttagaggaggcaacacagaaatcaggctttctgttgtcagagttttcttgatcgagagaaagcac 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30184649 tgctaatacaatcctcttacgccttgctgatgcatttaggggaggcaacacagaaatcaggctttctgttgtcagagttttcttgatcgagagaaagcac 30184748  T
Q  101 catgataacaggaagcacaagcagtgtaaagggttgctgtcagtggccagagtagctaaccatctggagttgttgaagcgggtgaaatctgttttcaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30184749 catgataacaggaagcacaagcagtgtaaagggttgctgtcagtggccagagtagctaaccatctggagttgttgaagcaggtgaaatctgttttcaaca 30184848  T
Q  201 gtggagattcagagtctaaggctctggctctggttctgtttggttgttgggctgattttgccaatgacaatgctcagatacgatactt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30184849 gtggagattcagagtctaaggctctggctctggttctgtttggttgttgggctgattttgccaatgacaatgctcagatacgatactt 30184936  T

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