View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_43 (Length: 284)
Name: NF12841_low_43
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_43 |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 7815723 - 7815455
Alignment:
| Q |
1 |
aatggtaatctaccatatatgttgtctgaactaacaaactaaatagttgcaacatatttagaatataaactaatgaaaaaaccgacaattctagtaacta |
100 |
Q |
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| T |
7815723 |
aatggtaatctaccatatatgttgtctgaactaacaaactaaatagttgcaacatatttagaatataaactaatgaaaaaaccgacaattctagtaacta |
7815624 |
T |
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| Q |
101 |
tactcattcaaatgaaagtttacatcctaaagatatccttggccagcaggtcaatacttcttgaatcctacnnnnnnnccaagtactgctagtagtaatg |
200 |
Q |
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| T |
7815623 |
tactcattcaaatgaaagtttacatcctaaagatatccttggccagcaggtcaatacttcttgaatcctactttttttccaagttgttctagtagtaatg |
7815524 |
T |
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| Q |
201 |
ctgattttcatgttctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattttcc |
269 |
Q |
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| T |
7815523 |
ctgattttcatgtcctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattttcc |
7815455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 3254903 - 3254947
Alignment:
| Q |
222 |
agactcgcattctgcaaaatatattttgtaaatcgaagatcattt |
266 |
Q |
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| T |
3254903 |
agactcgcattctgcaaaatatattttgcaaattgaagatcattt |
3254947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 7872370 - 7872294
Alignment:
| Q |
190 |
tagtagtaatgctgattttcatgttctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattt |
266 |
Q |
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| T |
7872370 |
tagtagtaacgccgattttcatgtcttctaaaagacctgcattctgcaaaatatatgttgcaaatcgaagatcattt |
7872294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 14308659 - 14308584
Alignment:
| Q |
191 |
agtagtaatgctgattttcatgttctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattt |
266 |
Q |
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| T |
14308659 |
agtagtaatgttgattgtcatgtcttgcaaacgtcttgcgttctgcaaaatatatgttgcaaatcgaagatcattt |
14308584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 14018750 - 14018712
Alignment:
| Q |
228 |
gcattctgcaaaatatattttgtaaatcgaagatcattt |
266 |
Q |
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| T |
14018750 |
gcattctgcaaaatgtattttgcaaatcgaagatcattt |
14018712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 1365 - 1401
Alignment:
| Q |
225 |
ctcgcattctgcaaaatatattttgtaaatcgaagat |
261 |
Q |
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| T |
1365 |
ctcgcattctgcaaaatatatgttgcaaatcgaagat |
1401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 28720076 - 28720120
Alignment:
| Q |
225 |
ctcgcattctgcaaaatatattttgtaaatcgaagatcattttcc |
269 |
Q |
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| T |
28720076 |
ctcgcattctgcagaatatactttgcaaatcggagatcattttcc |
28720120 |
T |
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