View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_44 (Length: 273)
Name: NF12841_low_44
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 35745854 - 35745608
Alignment:
| Q |
16 |
caaaattgaggtcaggaatgaagctgataagttgcaaaattatttccaggctttgtttatgatttttaattataaaaacatattatcttacttttttgtt |
115 |
Q |
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| T |
35745854 |
caaaattgaggtgaggaatgaagctgataagttgcaaaattatttccaggctttgtttatgatttttaattataaaaacatattatcttacttttttgtt |
35745755 |
T |
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| Q |
116 |
tctgaaaacatgcacaaaaattgttaaaattttgttacattcaatatctcctaaacaaattttggaaaatataaataaagtaacaagtataatatttagt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35745754 |
tctgaaaacatgcacaaaaattgttaaaattttgttacattcaatatctcctaaacaaattttggaaaatataaataaagtaacatgtataatatttagt |
35745655 |
T |
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| Q |
216 |
gatggtttttgcattgaaattatgaaagtgacatgaataacagtgaa |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35745654 |
gatggtttttgcattgaaattatgaaagtgacatgaataacattgaa |
35745608 |
T |
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