View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12841_low_46 (Length: 268)

Name: NF12841_low_46
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12841_low_46
NF12841_low_46
[»] chr4 (4 HSPs)
chr4 (1-246)||(47731733-47731978)
chr4 (93-250)||(50822894-50823051)
chr4 (85-250)||(26333912-26334077)
chr4 (91-250)||(11376216-11376368)
[»] chr5 (5 HSPs)
chr5 (85-250)||(11052044-11052209)
chr5 (142-243)||(24874046-24874147)
chr5 (85-244)||(11106715-11106874)
chr5 (91-197)||(30987097-30987203)
chr5 (151-228)||(4913900-4913977)
[»] chr2 (1 HSPs)
chr2 (85-237)||(43706607-43706759)
[»] chr7 (1 HSPs)
chr7 (91-231)||(9083023-9083164)
[»] chr6 (1 HSPs)
chr6 (91-201)||(12734486-12734595)
[»] chr8 (1 HSPs)
chr8 (91-182)||(17654871-17654961)
[»] chr3 (1 HSPs)
chr3 (85-171)||(41430547-41430633)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 47731978 - 47731733
Alignment:
Q  1 gaagtattgaaaaatgtagacaaaccaatacatatccattcaatccaaacagggctcttgaagtatctcaatctttgtctctcttaactgttttatctct 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||    
T  47731978 gaagtattgaaaaatgtagacaaaccaatacatatccactcaatccaaacagggctcttgaagtatctttatctttgtctctcttaactgttttatgtct 47731879  T
Q  101 tggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaataccca 200  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47731878 tggattaaaacaacataagcatgaaacctcattgggaaaccattgaggatgttgatacaatgaagagaatcagagtagcaaacaaaattagtaataccca 47731779  T
Q  201 tttctttggccaacaggagacccttatagatgacataaagttcaac 246  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||    
T  47731778 tttctttggccaacatgagacccttatagatgacataaagctcaac 47731733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 50822894 - 50823051
Alignment:
Q  93 ttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagt 192  Q
    |||| ||||| ||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||| || | ||| || |||||||||||||||| |||    
T  50822894 ttatgtcttgaattaaaacaacataagcatgaaacctcattgggggaccattgaggatgttgatacagtgtaaagagtcagagtagcaaacaaaatcagt 50822993  T
Q  193 aatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatac 250  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||||||| ||| |||||    
T  50822994 aatactcatttctttggccaacaagagacccttatagatggcataaagctcatcatac 50823051  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 85 - 250
Target Start/End: Original strand, 26333912 - 26334077
Alignment:
Q  85 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 184  Q
    ||||| |||||| ||||| |||||||||||||||||||  ||||||||| ||   ||||| |||||||||||| |||| | |||||| |||||| |||||    
T  26333912 taactcttttatgtcttgaattaaaacaacataagcatgtaacctcattggggggccattaaggatgttgatataatgtaaagaatcagagtagaaaaca 26334011  T
Q  185 aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatac 250  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||  ||||||||    
T  26334012 aaattagtaatacccatttctttggccaacaagatacccttatagatggcataaagcccaacatac 26334077  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 11376216 - 11376368
Alignment:
Q  91 ttttatctcttggattaaaacaa-cataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt 189  Q
    |||||| |||||||||| ||||| ||||||||| |||||||||||        ||| ||||| |||||||||| | |||||| ||||||||||||||||     
T  11376216 ttttatgtcttggattagaacaaacataagcatgaaacctcatta--------ttggggatggtgatacaatgtaaagaatcagagtagcaaacaaaatc 11376307  T
Q  190 agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatac 250  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||| || ||| |||||    
T  11376308 agtaatacccatttctttggccaacaaaagacccttatagatggcatagagctcagcatac 11376368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 85 - 250
Target Start/End: Original strand, 11052044 - 11052209
Alignment:
Q  85 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 184  Q
    ||||| |||||| ||||| ||||| ||||||||| ||| ||||||| || || ||||||||||||||||||||||||| | |||||| ||||||||||||    
T  11052044 taactcttttatatcttgaattaatacaacataaacattaaacctcgttggggaaccattgaggatgttgatacaatgtaaagaatcagagtagcaaaca 11052143  T
Q  185 aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatac 250  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||| |||| || |||||||||    
T  11052144 aaatcagtaatacctatttctttggccaacaagagacccttatagatggcatagagctcaacatac 11052209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 24874147 - 24874046
Alignment:
Q  142 attgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagt 241  Q
    ||||| ||||||||||||||| | |||||| || ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| |||    
T  24874147 attgaagatgttgatacaatgtaaagaatcagaatagcaaacaaaatcagtaatacccatttctttagccaacaagagacccttatagatgacatagagt 24874048  T
Q  242 tc 243  Q
    ||    
T  24874047 tc 24874046  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 11106874 - 11106715
Alignment:
Q  85 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 184  Q
    ||||| |||||| ||||| || |||||| ||||| ||| ||||||||| |||  |||||| |||||||||||||||||||||||||  ||||||||||      
T  11106874 taactcttttatatcttgaatcaaaacagcataaacatgaaacctcatgaggggaccattaaggatgttgatacaatgaagagaattagagtagcaaaat 11106775  T
Q  185 aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttca 244  Q
    |||| || | ||||||| | |||||||| ||  || |||| ||| ||| |||||||||||    
T  11106774 aaatcagaattacccatgtttttggccagcaaaaggccctgatatatggcataaagttca 11106715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 30987203 - 30987097
Alignment:
Q  91 ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta 190  Q
    |||||| ||||| || |||||||||||| ||| | ||||| |  ||  | |||| ||||||||||||||||||||| |||| ||||||||||| |||| |    
T  30987203 ttttatatcttgaatcaaaacaacataaacatgatacctcctggggggatcattaaggatgttgatacaatgaagaaaatcagagtagcaaactaaatca 30987104  T
Q  191 gtaatac 197  Q
     ||||||    
T  30987103 ttaatac 30987097  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 4913900 - 4913977
Alignment:
Q  151 gttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttata 228  Q
    |||||| ||| |||||||||  |||||||||||||||| |   |||||||||||||| ||||| | |||||| |||||    
T  4913900 gttgatgcaaagaagagaattcgagtagcaaacaaaatcatcgatacccatttctttagccaatatgagaccattata 4913977  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 85 - 237
Target Start/End: Original strand, 43706607 - 43706759
Alignment:
Q  85 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 184  Q
    ||||| |||||| ||||||||||||||  ||||| ||| |||||||||| ||  ||||| ||||||||||| |||||| | ||| || ||||| ||||||    
T  43706607 taactattttatgtcttggattaaaacggcataaacatgaaacctcattgggggaccatggaggatgttgagacaatgtaaagagtcagagtaacaaaca 43706706  T
Q  185 aaattagtaatacccatttctttggccaacaggagacccttatagatgacata 237  Q
    |||| |||||| || |||||||||||||||| |||||||||||| ||||||||    
T  43706707 aaatcagtaatgcctatttctttggccaacaagagacccttatatatgacata 43706759  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 9083023 - 9083164
Alignment:
Q  91 ttttatctcttggattaaaacaacataagcataaaacctcattaggaa-accattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt 189  Q
    |||||| |||||||||||||||  |||||||| |||||||||| ||   |||||||||||||||||||||||| | || ||| ||||||||||||||||     
T  9083023 ttttatatcttggattaaaacagaataagcatgaaacctcattggggggaccattgaggatgttgatacaatgtaaagcatcagagtagcaaacaaaatc 9083122  T
Q  190 agtaatacccatttctttggccaacaggagacccttatagat 231  Q
    |  ||||||||| | ||||||||||| |||||| ||||||||    
T  9083123 aagaatacccatatatttggccaacaagagacctttatagat 9083164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 12734595 - 12734486
Alignment:
Q  91 ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta 190  Q
    |||||| ||||| || |||||| ||||| ||| |||||||||  || | ||||| |||||||||||||||||||||||||| ||||||||||| |||| |    
T  12734595 ttttatatcttgaatcaaaacagcataaacatgaaacctcatggggga-ccattaaggatgttgatacaatgaagagaatcagagtagcaaactaaatca 12734497  T
Q  191 gtaatacccat 201  Q
    | |||||||||    
T  12734496 gaaatacccat 12734486  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 17654871 - 17654961
Alignment:
Q  91 ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaa 182  Q
    |||||| ||||| || |||||| |||||  || |||||||||| |||| ||||| |||||||||||||||| ||||||||| ||||||||||    
T  17654871 ttttatatcttgaatcaaaacagcataaagatgaaacctcatttggaa-ccattaaggatgttgatacaataaagagaatcagagtagcaaa 17654961  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 41430547 - 41430633
Alignment:
Q  85 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatc 171  Q
    ||||| |||||| ||||| ||  ||||| ||||| |||||||||||||   |  |||||| | ||||||||||||||||||||||||    
T  41430547 taactcttttatatcttgaatcgaaacatcataaacataaaacctcatggagggaccattaaagatgttgatacaatgaagagaatc 41430633  T

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