View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_49 (Length: 249)
Name: NF12841_low_49
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 7634688 - 7634471
Alignment:
| Q |
8 |
aggagcagagacaagttcagcaatagtggtttgggctatgacaacattgatgaacaatcctagagtgatgaacaaggttcaaatggaaatcagaaactta |
107 |
Q |
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| T |
7634688 |
aggaacagacacaagttcagcaatagtggtttgggctatgacaacattgatgaacaatcctagagtgatgaacaaggttcaaatggaaatcagaaactta |
7634589 |
T |
|
| Q |
108 |
tatgaagacaaagattttataaatgaagatgatattgaaaagctaccttatcttaaagcagtggtgaaagagacaatgagattatttccaccatcaccat |
207 |
Q |
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| T |
7634588 |
tatgaagacaaatattttataaatgaagatgatattgaaaagctaccttatcttaaagcagtggtgaaagagacaatgagattatttccaccatcaccat |
7634489 |
T |
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| Q |
208 |
tactagtaccaagagaaa |
225 |
Q |
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|||||||||||||||||| |
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| T |
7634488 |
tactagtaccaagagaaa |
7634471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 7623001 - 7622784
Alignment:
| Q |
8 |
aggagcagagacaagttcagcaatagtggtttgggctatgacaacattgatgaacaatcctagagtgatgaacaaggttcaaatggaaatcagaaactta |
107 |
Q |
| |
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|||| |||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7623001 |
aggaacagacacaagttcagcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaactta |
7622902 |
T |
|
| Q |
108 |
tatgaagacaaagattttataaatgaagatgatattgaaaagctaccttatcttaaagcagtggtgaaagagacaatgagattatttccaccatcaccat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | |||||||| || |||||||||| |
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| T |
7622901 |
tatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccat |
7622802 |
T |
|
| Q |
208 |
tactagtaccaagagaaa |
225 |
Q |
| |
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||||| | |||||||||| |
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| T |
7622801 |
tactattgccaagagaaa |
7622784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 7627552 - 7627335
Alignment:
| Q |
8 |
aggagcagagacaagttcagcaatagtggtttgggctatgacaacattgatgaacaatcctagagtgatgaacaaggttcaaatggaaatcagaaactta |
107 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7627552 |
aggaacagacacaagttcagcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaactta |
7627453 |
T |
|
| Q |
108 |
tatgaagacaaagattttataaatgaagatgatattgaaaagctaccttatcttaaagcagtggtgaaagagacaatgagattatttccaccatcaccat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | |||||||| || |||||||||| |
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|
| T |
7627452 |
tatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccat |
7627353 |
T |
|
| Q |
208 |
tactagtaccaagagaaa |
225 |
Q |
| |
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||||| | |||||||||| |
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|
| T |
7627352 |
tactattgccaagagaaa |
7627335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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