View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_5 (Length: 639)
Name: NF12841_low_5
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 48402609 - 48402862
Alignment:
| Q |
20 |
caaatgtgttccttctgggacttatgggaacaagcatgaatgtccttgctacagagacaaggttaacaataagggaaagcccaaatgcccttgatgtcaa |
119 |
Q |
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| T |
48402609 |
caaatgtgttccttctgggacttatggaaacaagcatgaatgtccttgctacagagacaaggttaacaataagggaaagcccaaatgcccttgatgtcaa |
48402708 |
T |
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| Q |
120 |
ttactaacaaagaccaaagcgagtgcccttatgtgtttactgtttgttttaggagttcaccaagatggttagtgagtgctacctgtgtaaggtgttagcg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48402709 |
ttactaacaaagaccaaagcgagtgcccttatgtgtttactgtttgttttaggagttcaccaagatggttagtgagtgctacctgtgtaaggtgttagcg |
48402808 |
T |
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| Q |
220 |
atttctcagtatgttcgattcatcttgttacttcagttttccaatgtttgttgg |
273 |
Q |
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| T |
48402809 |
atttctcagtatgttcgattcatcttgttacttcagttttccaatgtttgttgg |
48402862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 277 - 398
Target Start/End: Original strand, 48402896 - 48403017
Alignment:
| Q |
277 |
tacattgagttgggcaaacaaccattttagaccaataaatgtgggacattgtcgttaagatctcaatatgtacaaattgcaaacacattgtagtacttct |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48402896 |
tacattgagttgggcaaacaaccattttagaccaataaatgtgagacattgtcgttaagatctcaatatgtacaaattgcaaacacattgtagtacttct |
48402995 |
T |
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| Q |
377 |
tttgttattaattttatggatc |
398 |
Q |
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| T |
48402996 |
tttgttattaattttatggatc |
48403017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 488 - 626
Target Start/End: Original strand, 48403108 - 48403246
Alignment:
| Q |
488 |
caataaaccaaaatgattcataaaaaagaaatttgttcacatttttccatttttaaatttcattaatcagacgtgttcaatacaatttggtatttcaacc |
587 |
Q |
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| T |
48403108 |
caatagaccagaatgattcataaaaaagaaatttgttcacatgtttccatttttaaatttcattaatcagacatgttcaatacaatttggtatttcaccc |
48403207 |
T |
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| Q |
588 |
aatatctggaaattaactaataatgcggcttcctttgct |
626 |
Q |
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| T |
48403208 |
aatatctggaaattagctaataatgcggcttcctttgct |
48403246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 594
Target Start/End: Complemental strand, 47300392 - 47300341
Alignment:
| Q |
544 |
atttcattaatcaga-cgtgttcaatacaatttggtatttcaaccaatatct |
594 |
Q |
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||||||||||||| | ||||||||||||||||| ||||||||||||| |||| |
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| T |
47300392 |
atttcattaatcaaaacgtgttcaatacaatttagtatttcaaccaaaatct |
47300341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 561 - 592
Target Start/End: Complemental strand, 3627509 - 3627478
Alignment:
| Q |
561 |
tgttcaatacaatttggtatttcaaccaatat |
592 |
Q |
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| T |
3627509 |
tgttcaatacaatttggtatttcaaccaatat |
3627478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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