View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_52 (Length: 246)
Name: NF12841_low_52
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 3054532 - 3054598
Alignment:
| Q |
1 |
tttattaaataggcaccctaaagctaaaacaacatttgtctctacactttcagactaaagatttggg |
67 |
Q |
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| T |
3054532 |
tttattaaataggcatcctaaagctaaaacaacatttgtctctacactttcagactcaagatttggg |
3054598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 817777 - 817654
Alignment:
| Q |
89 |
actatcaggtcagaggggaccattgaaaggccctggtagatatcgacgtgtggttggcaaacttaattacctcacactgactagacaagacattacttgt |
188 |
Q |
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|||| |||||||| ||| ||| |||||| |||||| |||||||||||| | || ||||||||||||||||||||| | ||||||| ||||||||| | | |
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| T |
817777 |
actaccaggtcagcgggagccactgaaagaccctggcagatatcgacgtctagtcggcaaacttaattacctcacagtaactagaccagacattacattt |
817678 |
T |
|
| Q |
189 |
gttgttactgtggttagccaattt |
212 |
Q |
| |
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||||||| ||| |||||||||||| |
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| T |
817677 |
gttgttagtgtagttagccaattt |
817654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 22161210 - 22161062
Alignment:
| Q |
71 |
ggatctcaacttcaagcaactatcaggtcagaggggaccattgaaaggccctggtagatatcgacgtgtggttggcaaacttaattacctcacactgact |
170 |
Q |
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| T |
22161210 |
ggatcccaacgtcaagttactaccaggtcagggggagccactgaaagacccaggcagatatcgacgtctagtcggcaaacttaatttcctcacagtaact |
22161111 |
T |
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| Q |
171 |
agacaagacattacttgtgttgttactgtggttagccaatttttaaatg |
219 |
Q |
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| T |
22161110 |
agacaagacattacatttcttgttactgtagttagccaatttctaaatg |
22161062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 20592795 - 20592647
Alignment:
| Q |
71 |
ggatctcaacttcaagcaactatcaggtcagaggggaccattgaaaggccctggtagatatcgacgtgtggttggcaaacttaattacctcacactgact |
170 |
Q |
| |
|
||||| |||| ||||| |||| |||||||| ||| ||| |||||| |||||| |||||||||||| | || ||||||||||||||| |||| | ||| |
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| T |
20592795 |
ggatcccaacgtcaagttactaccaggtcagggggagccactgaaagaccctggcagatatcgacgtctagtcagcaaacttaattaccccacagtaact |
20592696 |
T |
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| Q |
171 |
agacaagacattacttgtgttgttactgtggttagccaatttttaaatg |
219 |
Q |
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|||| ||||||||| | |||||||| ||| || |||||||| |||||| |
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| T |
20592695 |
agaccagacattacatttgttgttagtgtaattggccaatttctaaatg |
20592647 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 34611182 - 34611299
Alignment:
| Q |
119 |
ccctggtagatatcgacgtgtggttggcaaacttaattacctcacactgactagacaagacattacttgtgttgttactgtggttagccaatttttaaat |
218 |
Q |
| |
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||||||| |||||||||| | ||||| |||||||||||||||||| |||| || | |||||||||| || ||| | ||||||||| |||||| ||||| |
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| T |
34611182 |
ccctggtcaatatcgacgtctagttggaaaacttaattacctcacagtgaccaggccggacattacttttgctgtcagtgtggttagtcaatttctaaat |
34611281 |
T |
|
| Q |
219 |
gttccgagtgatgtccat |
236 |
Q |
| |
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| ||| |||||| |||| |
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| T |
34611282 |
gctccatgtgatgaccat |
34611299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 30665969 - 30666061
Alignment:
| Q |
144 |
ggcaaacttaattacctcacactgactagacaagacattacttgtgttgttactgtggttagccaatttttaaatgttccgagtgatgtccat |
236 |
Q |
| |
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|||||||| |||||||||||| | | |||| ||||||||| | || ||||| |||||||||||||| | |||||| ||| |||||| |||| |
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| T |
30665969 |
ggcaaactaaattacctcacagtaagcagaccagacattacgtttgctgttagtgtggttagccaatctctaaatgctccatgtgatgaccat |
30666061 |
T |
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