View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_54 (Length: 241)
Name: NF12841_low_54
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 39545250 - 39545476
Alignment:
| Q |
5 |
cttttccaatacacattttagcgattagattatgagaatgtttcacctctagtttagtgaataaggtagaagggtgacattgcatgtatttatagaataa |
104 |
Q |
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| T |
39545250 |
cttttccaatacacattttggggactagattaggagaatgtttcacctctagtttagtgaataaggtagaagggtgacattgcatgtatttatagaataa |
39545349 |
T |
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| Q |
105 |
taatgttaagcaaagtgaattcggtaggtggtat------tttttattttactattctttatcaaagtcaatcgtgataacatgtgaaaacaattaaata |
198 |
Q |
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| T |
39545350 |
taatgtaaagcaaagtgaattctgtaggtggtatttttcctttttattttactattctttatcaaagtcaatcgtgataacatgtgaaaacaattaaata |
39545449 |
T |
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| Q |
199 |
cgagatattttattttgagcttgtacg |
225 |
Q |
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| T |
39545450 |
cgagatattttattttgagcttgtacg |
39545476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 39554634 - 39554796
Alignment:
| Q |
56 |
gtttagtgaataaggtagaagggtgacattgcatgtatttatagaataataatgttaagcaaagtgaattcggtaggtggtattttttattttactattc |
155 |
Q |
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| T |
39554634 |
gtttggtgaataaggtagaagggtg-cat-gcatgtatttatagaataac---gtagagcaaggtgaatttggtaggtaggagcatttattttactattc |
39554728 |
T |
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| Q |
156 |
tttatcaaagtcaatcgtgataacatgtgaaaacaattaaatacgagatattttattttgagcttgta |
223 |
Q |
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| T |
39554729 |
agaatcaaagtcaatcttggtagcatgtgaaaagaattatatatgggatattttgtttggagcttgta |
39554796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 39554564 - 39554609
Alignment:
| Q |
5 |
cttttccaatacacattttagcgattagattatgagaatgtttcac |
50 |
Q |
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| T |
39554564 |
cttttccaatacacattttggggactagattaggagaatgtttcac |
39554609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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