View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_55 (Length: 238)
Name: NF12841_low_55
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30185101 - 30185324
Alignment:
| Q |
1 |
tttttcttcatattttaaaaaattatgcaattatattgcaattgagaaactgcaattttaatttgacatacgaggttatactggagtggtttgataatta |
100 |
Q |
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| T |
30185101 |
tttttcttcatattttaaaaaattatgcaatcatattgcaattgagaaactgcaattttaatttgacatacgaggttatactggagtggtttgatgatta |
30185200 |
T |
|
| Q |
101 |
ttggaaattgtgttgtatttttcattttataaacaaggaggttgattgtgttggaatattctcctaattttcgtttcttgagttctttattgtttagcca |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30185201 |
ttggaaattgtgtggtatttttcattttataaacaaggaggttgattgtgttggaatattctcctaattttcgtttcttgagttctttattgtttagcca |
30185300 |
T |
|
| Q |
201 |
aacttctttgtggacactatgttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
30185301 |
aacttctttgtggacactatgttt |
30185324 |
T |
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