View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12841_low_56 (Length: 225)
Name: NF12841_low_56
Description: NF12841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12841_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 40180736 - 40180927
Alignment:
| Q |
16 |
aagaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttagtgcaacatcgtattcagtgggagcagtg |
115 |
Q |
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| T |
40180736 |
aagaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttagtgcaacatcgtattcagtgggagcagtg |
40180835 |
T |
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| Q |
116 |
gggcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagatt |
207 |
Q |
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| T |
40180836 |
gggcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaattctacaaagtggataagatt |
40180927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 44459420 - 44459331
Alignment:
| Q |
118 |
gcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagatt |
207 |
Q |
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| T |
44459420 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagatt |
44459331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 44466953 - 44466864
Alignment:
| Q |
118 |
gcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagatt |
207 |
Q |
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| T |
44466953 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagatt |
44466864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 44460109 - 44460076
Alignment:
| Q |
131 |
acaagggattccagaacaggggtagtgatgagat |
164 |
Q |
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| T |
44460109 |
acaagggattccagaacaggggtagtgatgagat |
44460076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 44467642 - 44467609
Alignment:
| Q |
131 |
acaagggattccagaacaggggtagtgatgagat |
164 |
Q |
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| T |
44467642 |
acaagggattccagaacaggggtagtgatgagat |
44467609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 44460211 - 44460150
Alignment:
| Q |
26 |
gtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttag |
87 |
Q |
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| T |
44460211 |
gtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
44460150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 44467744 - 44467683
Alignment:
| Q |
26 |
gtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttag |
87 |
Q |
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| T |
44467744 |
gtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
44467683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 46358978 - 46358902
Alignment:
| Q |
131 |
acaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagatt |
207 |
Q |
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| T |
46358978 |
acaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagatt |
46358902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 46359081 - 46359020
Alignment:
| Q |
26 |
gtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttag |
87 |
Q |
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| T |
46359081 |
gtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
46359020 |
T |
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